RetrogeneDB ID: retro_etel_2208

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_98936:5213..5660(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: REEP5
• Ensembl ID: ENSETEG00000010270
• Aliases: None
• Description: receptor accessory protein 5 [Source:HGNC Symbol;Acc:30077]

Sequence

>retro_etel_2208
ATCATCGGGCTGGTCGCCTTGTACCTGGTGTTCGGTTATGGAGCCTCTCTTCTCTGCAACCTGATCGGATTCGGCTACCC
AGCCTACATCTCAATTAAAGCCATTGAGAGTCCCAACAAAGAAGATGACACCCAGTGGCTGACATACTGGGTCGTATACG
GTGTGTTCAGTATTGCCGAATTCTTCTCTGATATCTTCCTGTCATGGTTTCCCTTCTACTACATGCTGAAGTGTGGCTTC
TTGTTGTGGTGCATGGCACCAAGCCCTTCTAATGGAGCTGAACTGCTCTACATGCGCATCATCCGCCCCATCTTCCTGAA
GCATGAGAACCAGGTAGACAGTGTGATGAAGGATCTGAAAGATAAAGCCAAAGAGACTGCAGATGCCATCACTAAAGAAG
CCAAGAAAGCCACCGTGAATTTGCTGGGCGAAGAAAAGAAGAGCACC

Alignment

ORF - retro_etel_2208 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.66 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  IIGLVALYVVFGYGASLLCNMIGFGYPAYISIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDIFLSWF
          IIGLVALY.VFGYGASLLCN.IGFGYPAYISIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDIFLSWF
Retrocopy IIGLVALYLVFGYGASLLCNLIGFGYPAYISIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDIFLSWF

Parental  PFYYMLKCGFLLWCMAPSPSNGAELLYMRIIRPIFLKHENQVDSVMKDLKDKAKETADAITKEAKKATVN
          PFYYMLKCGFLLWCMAPSPSNGAELLYMRIIRPIFLKHENQVDSVMKDLKDKAKETADAITKEAKKATVN
Retrocopy PFYYMLKCGFLLWCMAPSPSNGAELLYMRIIRPIFLKHENQVDSVMKDLKDKAKETADAITKEAKKATVN

Parental  LLGEEKKST
          LLGEEKKST
Retrocopy LLGEEKKST

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_2208 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000010270	1 retrocopy	retro_etel_2208 ,
Macropus eugenii	ENSMEUG00000006088	4 retrocopies	retro_meug_1110, retro_meug_1625, retro_meug_293, retro_meug_747,
Tursiops truncatus	ENSTTRG00000001691	1 retrocopy	retro_ttru_1155,
Drosophila melanogaster	FBgn0033906	1 retrocopy	retro_dmel_12,