RetrogeneDB ID: retro_meug_2133

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold93016:5097..5842(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MTFR1L
• Ensembl ID: ENSMEUG00000016175
• Aliases: None
• Description: mitochondrial fission regulator 1-like [Source:HGNC Symbol;Acc:28836]

Sequence

>retro_meug_2133
CAAACACTGCACAACATCTCTGACCTATTTCTGAGTGATGTGCCCCCTGTTCTTACTTTGGCTCATATTGACTGGATAGC
AGCAGATGTAGAGGAAACCTAAGCTTGAGTCAGGAGTGACACCCCACCCTTGCAGCATAAGTGGAAGCACAGCCTGCTGT
TTGTCATGCAGTGCAATGCCTCAGTGCCCAGCCTTTGAGGGATGAAGGAGAGGCTCCTGGTCTTGAAGAAGCCTGGCCTA
CCAACCCTGAGCAGAACCACTGAATTACAAGATGAGCTAAGTCACCTACACAGCCAGATTGCCAAGTTTGTGGCAGCAAA
TGGAAACCTTGGTTTCATTAACACCAGATTTCTTTTCTTCAGGAAGTTCAGATGTCTCTTCTCCCTTACCTTGTTTTGGG
TCCTCATTCCACTCCACAACTTTCTTTGTCATTAGCGACATCACAGAGGAGGCAGAGTTAGAAAGGACTGAGCTTCCATC
CATTCCCATGCTTTGTTCTACCAGCTCTGAATATTGTAAAACTGACTCCAAAGCTGTCAGCAGCCTGGCTGAAGATGCCA
ACTCTGCATCTCTCTCAAAGGTTAGCAGCTTTGCAGATATGATAGACATCCTGAACGACATTCACCTGATGAAGCAGAGC
CAAGACCTGAATTAGAGCTTGATGAAGGAAGAAGACTCAACTATCCTTATTTCAGAGATGTGGAGGAGAAAGTTTGCTCT
GAAGGAAGAGGATATCAGCATGAAA

Alignment

ORF - retro_meug_2133 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.91 %
• Parental protein coverage: 85.52 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  QTLPNISDLYLSDVPPVPTLADIAWIAADEEETYARVRYDTRPLRHKWKPSPLFVMQRNASVPNLRGPEE
          QTL.NISDL.LSDVPPV.TLA.I.WIAAD.EET.A.VR.DT.PL.HKWK.S.LFVMQ.NASVP.L.G..E
Retrocopy QTLHNISDLFLSDVPPVLTLAHIDWIAADVEET*A*VRSDTPPLQHKWKHSLLFVMQCNASVPSL*GMKE

Parental  RLLALKKPGLPALSRTTELQDELSHLRSQIAKIVAADA-ASASLTPDLFSSGSSNVSSPLPCFGSSFHST
          RLL.LKKPGLP.LSRTTELQDELSHL.SQIAK.VAA......SLTPD.FSSGSS.VSSPLPCFGSSFHST
Retrocopy RLLVLKKPGLPTLSRTTELQDELSHLHSQIAKFVAANG>TLVSLTPDFFSSGSSDVSSPLPCFGSSFHST

Parental  TSFVISDITEEAELEGPELPSVPMLCSASSECCKTDSKAACSLVEDDDCVSLSKASSFADMMGILKDIHR
          T.FVISDITEEAELE..ELPS.PMLCS.SSE.CKTDSKA..SL.ED....SLSK.SSFADM..IL.DIH.
Retrocopy TFFVISDITEEAELERTELPSIPMLCSTSSEYCKTDSKAVSSLAEDANSASLSKVSSFADMIDILNDIHL

Parental  MKQSQDLNRSLMKEEDPAVLISEVLRRKFALKEEDISVK
          MKQSQDLN.SLMKEED...LISE..RRKFALKEEDIS.K
Retrocopy MKQSQDLN*SLMKEEDSTILISEMWRRKFALKEEDISMK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_2133 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_2133 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000012794	1 retrocopy	retro_fcat_667,
Macropus eugenii	ENSMEUG00000016175	4 retrocopies	retro_meug_1948, retro_meug_2133 , retro_meug_359, retro_meug_557,
Myotis lucifugus	ENSMLUG00000010738	1 retrocopy	retro_mluc_338,
Tursiops truncatus	ENSTTRG00000012479	2 retrocopies	retro_ttru_1262, retro_ttru_327,
Vicugna pacos	ENSVPAG00000004314	1 retrocopy	retro_vpac_458,