RetrogeneDB ID: retro_meug_2092

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold89556:1372..1792(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RSU1
• Ensembl ID: ENSMEUG00000006702
• Aliases: None
• Description: Ras suppressor protein 1 [Source:HGNC Symbol;Acc:10464]

Sequence

>retro_meug_2092
AGGCTGAATACTTTGCCCAGAGGATTTGGCTCATTACCTGTCCTGGAGGTCCTTGACTTGACTTATAACAACTTGAATGA
AAATTCTCTCCCCGGAAACTTCTTCTACCTTACCACCCTACAGGCACTTTATATCAGTGACAACAATTTTGAAATCCTGT
CGCCAGATGTTGGGAAGCTCACAAAGTTGCAGATACTCAGCCTTAGGGATAATGACCTGATTTCACTGCCAAAAGAAATT
GGGGAACTTACACAGCTGAAGGCACTACATATCCAGGGGAACTGCCTGACTGTCCTGCCCCCTGAACGCAGAAACTTGGA
TTTAACTGGTCAGAAGCAGGTCTTCAAAGCAGAGAATAATCCTTGTGTTACCCCAACTGCTGACCAGTTCCAACTCGGAG
TGTCCCATGTCTTTGAACAT

Alignment

ORF - retro_meug_2092 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.71 %
• Parental protein coverage: 51.09 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RLNTLPRGFGSLPALEVLDLTYNNLNENSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTKLQILSLRD
          RLNTLPRGFGSLP.LEVLDLTYNNLNENSLPGNFFYLTTL.ALY.SDN.FEIL.PD.GKLTKLQILSLRD
Retrocopy RLNTLPRGFGSLPVLEVLDLTYNNLNENSLPGNFFYLTTLQALYISDNNFEILSPDVGKLTKLQILSLRD

Parental  NDLISLPKEIGELTQLKELHIQGNRLTVLPPELGNLDLTGQKQVFKAENNPWVTPIADQFQLGVSHVFEY
          NDLISLPKEIGELTQLK.LHIQGN.LTVLPPE..NLDLTGQKQVFKAENNP.VTP.ADQFQLGVSHVFE.
Retrocopy NDLISLPKEIGELTQLKALHIQGNCLTVLPPERRNLDLTGQKQVFKAENNPCVTPTADQFQLGVSHVFEH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_2092 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_2092 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000148484	1 retrocopy	retro_hsap_575,
Gorilla gorilla	ENSGGOG00000028048	1 retrocopy	retro_ggor_512,
Macropus eugenii	ENSMEUG00000006702	1 retrocopy	retro_meug_2092 ,
Macaca mulatta	ENSMMUG00000016067	1 retrocopy	retro_mmul_712,
Monodelphis domestica	ENSMODG00000009942	1 retrocopy	retro_mdom_338,
Nomascus leucogenys	ENSNLEG00000012444	1 retrocopy	retro_nleu_462,
Pongo abelii	ENSPPYG00000002120	1 retrocopy	retro_pabe_611,
Pan troglodytes	ENSPTRG00000002325	1 retrocopy	retro_ptro_425,
Tarsius syrichta	ENSTSYG00000002386	1 retrocopy	retro_tsyr_730,