RetrogeneDB ID: retro_meug_1823

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold62229:6947..7414(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SLC7A6OS
• Ensembl ID: ENSMEUG00000003614
• Aliases: None
• Description: solute carrier family 7, member 6 opposite strand [Source:HGNC Symbol;Acc:25807]

Sequence

>retro_meug_1823
CCCGAAAAATCTCATCCACATGTGATCATCTCTAATTCAGTAAGGGTGATCCGGGAGCCACAGGCCATCTGCAAGGGTGA
AAAACGCACAGGGCACCGAGAAAAGGAAGAAGACTATGTTTATGACCTCAAGGACCTGGAGACATCTGCGCACGGATAGA
CTAAAGGCATACTCTCTGGACAGCCCTACAGTAAGGACTGCGAGCTGGAAGCAGATGATCAAGCAGAGGAAATGGAAGAA
GATGATGATGTTGAAGAAGATGAAAACACTGGGAATCACTGGCGTAATGAGGACCCTGATCAGAAGAAGGAAGCAGTGAC
ACAGAGAGCACTGGAGGGTCTCATAAAGATAACGGCAGTTTTACTGATGAGGAAAGAAGTGTCATTAGACCAAGGAAATG
GAACAAATATCCCTGTGATGTGCTCAGAGAGTTGGAGTATGACGGCTCTCAGGACTTCGATTCAGAC

Alignment

ORF - retro_meug_1823 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.82 %
• Parental protein coverage: 58.94 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  PPKSDPDVILCNSVRMIRERLAISKDGKGTNHREKEDEYVYDIYYMETSTPGWIESILSVQPYSEEWELV
          P.KS.P.VI..NSVR.IRE..AI.K..K.T.HREKE..YVYD....ETS..G....ILS.QPYS...EL.
Retrocopy PEKSHPHVIISNSVRVIREPQAICKGEKRTGHREKEEDYVYDLKDLETSAHG*TKGILSGQPYSKDCELE

Parental  ADDHQAEEIDDDDD--EDENSENHWRNEYPDE-EEGSSDRESTRGSDEEYGSFSDEESSVIRPRKWNKYP
          ADD.QAEE...DDD..EDEN..NHWRNE.PD..EEGSSD.EST.GS....GSF.DEE.SVIRPRKWNKYP
Retrocopy ADD-QAEEMEEDDDVEEDENTGNHWRNEDPDQ<EEGSSDTESTGGSHKDNGSFTDEERSVIRPRKWNKYP

Parental  YDVLKEFEYDSSQDLDSD
          .DVL.E.EYD.SQD.DSD
Retrocopy CDVLRELEYDGSQDFDSD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1823 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1823 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000007958	1 retrocopy	retro_amel_1808,
Macropus eugenii	ENSMEUG00000003614	6 retrocopies	retro_meug_1263, retro_meug_1647, retro_meug_1823 , retro_meug_849, retro_meug_884, retro_meug_979,
Myotis lucifugus	ENSMLUG00000005953	1 retrocopy	retro_mluc_346,