RetrogeneDB ID: retro_meug_149

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_4335:2714..2951(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMEUG00000015637
• Aliases: None
• Description: None

Sequence

>retro_meug_149
ATGGCATCAGCCACTGGCTTCATCCAGGGGCTCCGGAATTCGGCCTCCAGGTATAATCTTCAAGCTAAATTGCAGTTATG
TCACCAGGACACAGCTAAGAGAACTCAGCCACCTTCTAAGCTGCCAGTGGGCCCTAGCCATAAGTTTTCAAACAATTATT
ACTGTACTCATGATGTACGTCAGCAATCCTCTCCTCCTTTAATCATAATGACCACTGTGAAAATTTTAGAATCTGGT

Alignment

ORF - retro_meug_149 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 74.68 %
• Parental protein coverage: 78.22 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MASATGFIQWLRNSASGHNLQAKLQLRYQEIAKRTQPPPKLPVGPSHKFSNNYYCTRDGRRQASPPSIVM
          MASATGFIQ.LRNSAS..NLQAKLQL..Q..AKRTQPP.KLPVGPSHKFSNNYYCT.D.R.Q.SPP.I.M
Retrocopy MASATGFIQGLRNSASRYNLQAKLQLCHQDTAKRTQPPSKLPVGPSHKFSNNYYCTHDVRQQSSPPLIIM

Parental  SEEAITTSG
          ....I..SG
Retrocopy TTVKILESG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_149 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_149 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000000685	1 retrocopy	retro_chof_2004,
Callithrix jacchus	ENSCJAG00000010709	2 retrocopies	retro_cjac_2942, retro_cjac_956,
Dipodomys ordii	ENSDORG00000012324	1 retrocopy	retro_dord_155,
Macropus eugenii	ENSMEUG00000015637	3 retrocopies	retro_meug_1487, retro_meug_149 , retro_meug_587,
Rattus norvegicus	ENSRNOG00000006939	2 retrocopies	retro_rnor_1491, retro_rnor_1793,