RetrogeneDB ID: retro_meug_1365

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold382123:692..1571(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMEUG00000013928
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: BYSL
• Ensembl ID: ENSMEUG00000000759
• Aliases: None
• Description: bystin-like [Source:HGNC Symbol;Acc:1157]

Sequence

>retro_meug_1365
CGTACACTGGCTGACATCATCATGGAGAAATTGACAGAAAAGCAGACAGAGGTAGAAACTGTAATGTCTGAGGTGTCAGG
CTGCCCTATGCCCCAGCTGGATCCCTGGGTTCTTGAAGTCTACAAGGGTGTCAGAGAGGTGTTATCCAAGTACCGGAGTG
GCAAACTTCCTAAGGCCTTTAAAATTATTCTTGCTCTCTCCAATTGGGAACAGATCCTCTATATCACAGAGCCAGAGAGC
TGGACTGCAGCTACCATGTACCAGGCCACCAGGATATTCTCATCTAATCTCAAGGAAAGGATGGCCCACCGCTTCTACAA
CTTGGTGTTCCTCCCCCGTGTGCGGGATGACATTGCTGAATACAAACGCCTTAACTTTCACCTCTACATGGCACTCAAGA
AAGCATTGTTCAAGACTGGGGCCTGGTTCAAAGGGATCCTGATACTCTTATGTGAGTCTGGTACCTGTACCCTTCGAGAA
GCCATCATTGTGGGCAGCATCATCACCAAGTGCTCCATCCCTGTGCTGCACTCAAGTGCAGCCATGCTGAAAATTGCTGA
GATGGAATACAGTGAAGCCAACAGCATCTTCCTAAGGCTACTGCTAGACAAGAAGTATGCACTGCCCTTCCGGGTACTGG
ATGCCTTGGTCTTCCACTTCCTGGCCTTCTGGACTGAGCAGCGAAAGTTGCCTGTGCTTTGGCACCAGAGCCTGCTGACC
CTGGCTCAGCGCTATAAAGCTGATCTGATGACAGAACAGAAGGAGGCCCTGCTAGAACTTCTTAACCTGCAACCCCACCC
ACAGCTCTCCCCAGAAATCCGAAGGGAGCTGCTCAGTGCTACTGCCCAAGATGTGGAAGGGTCCTGTGTGAATATGGAC

Alignment

ORF - retro_meug_1365 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.54 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RTLADIIMEKLTEKQTEVETVMSEVSGCPMPQLDPRVLEVYKGVREVLSKYRSGKLPKAFKIIPALSNWE
          RTLADIIMEKLTEKQTEVETVMSEVSGCPMPQLDP.VLEVYKGVREVLSKYRSGKLPKAFKII.ALSNWE
Retrocopy RTLADIIMEKLTEKQTEVETVMSEVSGCPMPQLDPWVLEVYKGVREVLSKYRSGKLPKAFKIILALSNWE

Parental  QILYITEPESWTAAAMYQATRIFSSNLKERMAQRFYNLVLLPRVRDDIAEYKRLNFHLYMALKKALFKTG
          QILYITEPESWTAA.MYQATRIFSSNLKERMA.RFYNLV.LPRVRDDIAEYKRLNFHLYMALKKALFKTG
Retrocopy QILYITEPESWTAATMYQATRIFSSNLKERMAHRFYNLVFLPRVRDDIAEYKRLNFHLYMALKKALFKTG

Parental  AWFKXXXIPLCESGTCTF-EAIIVGSIITKCSIPVLHSSAAMLKIAEMEYSGANSIFLRLLLDKKYALPF
          AWFK...I.LCESGTCT..EAIIVGSIITKCSIPVLHSSAAMLKIAEMEYS.ANSIFLRLLLDKKYALPF
Retrocopy AWFKGILILLCESGTCTLREAIIVGSIITKCSIPVLHSSAAMLKIAEMEYSEANSIFLRLLLDKKYALPF

Parental  RVLDALVFHFLAFRTEQRKLPVLWHQSLLTLAQRYKADLTTEQKEALLELLRLQPHPQLSPEIRRELLSA
          RVLDALVFHFLAF.TEQRKLPVLWHQSLLTLAQRYKADL.TEQKEALLELL.LQPHPQLSPEIRRELLSA
Retrocopy RVLDALVFHFLAFWTEQRKLPVLWHQSLLTLAQRYKADLMTEQKEALLELLNLQPHPQLSPEIRRELLSA

Parental  TARDVEGSCVNMD
          TA.DVEGSCVNMD
Retrocopy TAQDVEGSCVNMD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1365 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1365 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000010101	1 retrocopy	retro_btau_1246,
Choloepus hoffmanni	ENSCHOG00000011476	1 retrocopy	retro_chof_1615,
Macropus eugenii	ENSMEUG00000000759	2 retrocopies	retro_meug_1365 , retro_meug_608,
Oryctolagus cuniculus	ENSOCUG00000017567	1 retrocopy	retro_ocun_514,