RetrogeneDB ID: retro_meug_130

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: GeneScaffold_3884:11845..12230(+)
• Located in intron of: ENSMEUG00000005651

Retrocopy information

• Ensembl ID: ENSMEUG00000005667
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ORMDL3
• Ensembl ID: ENSMEUG00000000957
• Aliases: None
• Description: ORM1-like 3 (S. cerevisiae) [Source:HGNC Symbol;Acc:16038]

Sequence

>retro_meug_130
CACGCACTGGGAGTTGGTTTGCTTCATATTGTCTTACTCAGCATTCCCTTCTTCAGTGTTCCTGTTGCTTGGACTTTAAC
AAATATTTTACATAATCTGGGAATGTATGTATTTTTACATGCTATAAAAGGAACACCTTTTGAAACTCCTGGCCAGGGTA
AAGCCAAGCTGCTAACACATTGGGGAACAGCTGAACTATGGAGTGCAGTTTACTTCTTCATGGAAGTTCTCCACAATTTC
TCCAATAATTCTATATTTTCTGGCAAGTTTCTACACCAAGTATGATCCTACACATTTCATCTTAAACACAGCTTCTCTCC
TGAGTGTGCTAATTCCCAAAATGCCACAACTGCATGGTGTTCGGATCTTTGGTATTAATAAGTAC

Alignment

ORF - retro_meug_130 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.29 %
• Parental protein coverage: 83.66 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  YVLAIGLLHIVLLSIPFVSVPVVWTLTNLIHNMGMYIFLHTVKGTPFETPDQGKARLLTHW-EQMDYGVQ
          ..L..GLLHIVLLSIPF.SVPV.WTLTN..HN.GMY.FLH..KGTPFETP.QGKA.LLTHW.EQ..YGVQ
Retrocopy HALGVGLLHIVLLSIPFFSVPVAWTLTNILHNLGMYVFLHAIKGTPFETPGQGKAKLLTHW>EQLNYGVQ

Parental  FTASRKFLTITPIVLYFLTSFYTKYDQLHFILNTVSLMSVLIPKLPQLHGVRIFGINKY
          FT.S.KF.TI.PI.LYFL.SFYTKYD..HFILNT.SL.SVLIPK.PQLHGVRIFGINKY
Retrocopy FTSSWKFSTISPIILYFLASFYTKYDPTHFILNTASLLSVLIPKMPQLHGVRIFGINKY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_130 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_130 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000031660	1 retrocopy	retro_fcat_730,
Macropus eugenii	ENSMEUG00000000957	3 retrocopies	retro_meug_1234, retro_meug_130 , retro_meug_2052,
Macropus eugenii	ENSMEUG00000014896	1 retrocopy	retro_meug_767,
Mus musculus	ENSMUSG00000038150	1 retrocopy	retro_mmus_2464,
Sarcophilus harrisii	ENSSHAG00000014339	1 retrocopy	retro_shar_372,