RetrogeneDB ID: retro_mdom_559

Retrocopy location

• Organism: Opossum (Monodelphis domestica)
• Coordinates: 1:302542716..302542926(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MYEOV2
• Ensembl ID: ENSMODG00000013501
• Aliases: None
• Description: myeloma overexpressed 2 [Source:HGNC Symbol;Acc:21314]

Sequence

>retro_mdom_559
ACAAGCTTGAAGTACCAGGCCAAGAGAGAAGGACAGACTGACTAGGGCATGAAACCAGCTGTAGAAGAGACATTCCCTCA
GGATCCTGGGCTGTATGTAGACCTGGAGGGAGGCAGGAGGCCTTTGATAGACTTGGCAGCCAATGAAAAGGCCTTCCACG
CAGAGTTCTTTAATGATTTTGAAGAGCTTTTTGATGATGATGATATCCAG

Alignment

ORF - retro_mdom_559 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 63.01 %
• Parental protein coverage: 68.87 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TSVTCWAETEGQIDGIMKPAVDEMFPEGAGPYVDLDEAGGSTGLLMDLAANEKAVHADFFNDFEDLFDDD
          TS....A..EGQ.D..MKPAV.E.FP...G.YVDL....G....L.DLAANEKA.HA.FFNDFE.LFDDD
Retrocopy TSLKYQAKREGQTD*GMKPAVEETFPQDPGLYVDLE---GGRRPLIDLAANEKAFHAEFFNDFEELFDDD

Parental  DIQ
          DIQ
Retrocopy DIQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain	0.00 RPM	0.00 RPM
SRP007412_cerebellum	0.00 RPM	0.00 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.00 RPM	0.00 RPM
SRP007412_liver	0.00 RPM	0.00 RPM
SRP007412_testis	0.00 RPM	0.00 RPM

ChIP-Seq

Monodelphis domestica was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mdom_559 retrocopy.

TSS

Monodelphis domestica was not studied using FANTOM5 data.

Lab

retro_mdom_559 was not experimentally validated.

Homology

Retrocopy orthology:

Monodelphis domestica does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000172428	1 retrocopy	retro_hsap_1414,
Macaca mulatta	ENSMMUG00000011336	2 retrocopies	retro_mmul_166, retro_mmul_931,
Monodelphis domestica	ENSMODG00000013501	1 retrocopy	retro_mdom_559 ,
Mus musculus	ENSMUSG00000073616	1 retrocopy	retro_mmus_3582,
Ictidomys tridecemlineatus	ENSSTOG00000000776	1 retrocopy	retro_itri_718,