RetrogeneDB ID: | retro_gmor_14 | ||
Retrocopy location | Organism: | Cod (Gadus morhua) | |
| Coordinates: | GeneScaffold_1760:52506..52950(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSGMOG00000020266 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | HBB3 | ||
| Ensembl ID: | ENSGMOG00000015840 | ||
| Aliases: | None | ||
| Description: | Hemoglobin beta 3 [Source:UniProtKB/TrEMBL;Acc:C8YNR1] |
Retrocopy-Parental alignment summary:
>retro_gmor_14
ATGGTTGAGTGGACTGATGAAGAGCGCACCATCATTAATGACATCTTCTCCACCTTGGACTACGAAGAGATCGGTCGCAA
GTCTCTGTGCAGGTGTCTGATCGTGTACCCCTGGACCCAGAGGTACTTCGGCGCCTTCGGCAACCTGTACAATGCAGAGA
CCATCATGGCCAACCCCCTGATCGCAGCCCACGGCACCAAGATCCTGCACGGTCTGGACCGGGCCCTGAAGAACATGGAC
GACATCAAGAACACCTACGCCGAGCTGTCTCTGCTCCACTCTGACAAGCTGCACGTGGATCCCGACAACTTCAGGCTGCT
GGCCGACTGCCTGACCGTCGTCATCGCCGCCAAGATGGGCACCAAATTCACCGTGGAGACCCAGGTGGCGTGGCAGAAGT
TCCTGTCTGTCGTCGTCTCCGCTCTGGGCAGACAGTACCACTAG
ORF - retro_gmor_14 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 93.2 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MVEWTDSERAIINSIFSNLDYEEIGRKSLCRCLIVYPWTQRYFGGFGNLYNAETILCNPLIAAHGTKILH |
| MVEWTD.ER.IIN.IFS.LDYEEIGRKSLCRCLIVYPWTQRYFG.FGNLYNAETI..NPLIAAHGTKILH | |
| Retrocopy | MVEWTDEERTIINDIFSTLDYEEIGRKSLCRCLIVYPWTQRYFGAFGNLYNAETIMANPLIAAHGTKILH |
| Parental | GLDRALKNMDDIKNTYAELSLLHSDKLHVDPDNFRLLADCLTVVIAAKMGPAFTVDTQVAWQKFLSVVVS |
| GLDRALKNMDDIKNTYAELSLLHSDKLHVDPDNFRLLADCLTVVIAAKMG..FTV.TQVAWQKFLSVVVS | |
| Retrocopy | GLDRALKNMDDIKNTYAELSLLHSDKLHVDPDNFRLLADCLTVVIAAKMGTKFTVETQVAWQKFLSVVVS |
| Parental | ALGRQYH |
| ALGRQYH | |
| Retrocopy | ALGRQYH |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Gadus morhua was not studied using RNA-Seq expression data.
Gadus morhua was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_gmor_14 retrocopy.
Gadus morhua was not studied using FANTOM5 data.
retro_gmor_14 was not experimentally validated.
Retrocopy orthology:
Gadus morhua does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Gadus morhua | ENSGMOG00000015840 | 1 retrocopy |
retro_gmor_14 ,
|