RetrogeneDB ID: retro_ggor_1905

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 3:188044908..188045126(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C19ORF79
• Ensembl ID: ENSGGOG00000027594
• Aliases: None
• Description: None

Sequence

>retro_ggor_1905
ATGGGGGTGAAGCCGAAGATATTTCGGATGATAATCTACCTCACTTTCCCTGTGGCTATGTTCTGGGTTTCCAATCAGGC
CGAGTGGTTTGAGGATGATGTCATACAGCGCAAGAGGGAGCTGTGGCCACCTGAGAAGCTTCAAGAGTTAGAGGAATTCA
AAGAGAGGTTACGGAAGCGGCGGGAGGAAAGCTCCTTCGCGACGCCCAGCAGAACTCC

Alignment

ORF - retro_ggor_1905 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.91 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MGVKLEIFRMIIYLTFPVAMFWVSNQAEWFEDDVIQRKRELWPPEKVTVLQEIEEFKERLRKRREE-KLL
          MGVK..IFRMIIYLTFPVAMFWVSNQAEWFEDDVIQRKRELWPPEK...LQE.EEFKERLRKRREE.KLL
Retrocopy MGVKPKIFRMIIYLTFPVAMFWVSNQAEWFEDDVIQRKRELWPPEK---LQELEEFKERLRKRREE<KLL

Parental  RDAQQNS
          RDAQQNS
Retrocopy RDAQQNS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.72 RPM	22.59 RPM
SRP007412_cerebellum	0.43 RPM	14.14 RPM
SRP007412_heart	0.78 RPM	23.67 RPM
SRP007412_kidney	1.64 RPM	32.55 RPM
SRP007412_liver	1.16 RPM	22.79 RPM
SRP007412_testis	1.66 RPM	25.17 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_1905 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_1905 has 1 orthologous retrocopies within eutheria group .

Species	RetrogeneDB ID
Pan troglodytes	retro_ptro_120

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000008524	2 retrocopies	retro_amel_591, retro_amel_878,
Equus caballus	ENSECAG00000008451	1 retrocopy	retro_ecab_606,
Felis catus	ENSFCAG00000023931	2 retrocopies	retro_fcat_1266, retro_fcat_1752,
Gorilla gorilla	ENSGGOG00000027594	1 retrocopy	retro_ggor_1905 ,
Pan troglodytes	ENSPTRG00000039245	1 retrocopy	retro_ptro_120,