RetrogeneDB ID: retro_fcat_81

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: B3:96208815..96209460(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSFCAG00000014828
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSFCAG00000011395
• Aliases: None
• Description: None

Sequence

>retro_fcat_81
ATGGGCCGCAGACCAGCTCGATGTTACCGGTACTGCAAAAACAAGCCGTATCCAAAGTCTCGTTTCTGCCGTGGTGTTCC
TGATGCCAAGATCCGCATATTTGACCTGGGTCGGAAGAAGGCAAAAGTGGATGAGTTCCCACTCTGTGGTCACATGGTGT
CTGATGAATATGAGCAGCTCTCTTCTGAAGCCCTGGAGGCCGCTCGAATTTGTGCCAACAAGTATATGGTGAAAAGTTGT
GGCAAAGACGGCTTTCATATTCGAGTGCGGCTTCATCCCTTCCATGTCATCCGCATCAACAAGATGTTGTCCTGTGCTGG
GGCTGACAGGCTCCAGACAGGTATGCGAGGTGCCTTTGGAAAGCCCCAGGGCACAGTGGCCAGAGTCCATATTGGTCAAG
TCATCATGTCCATCCGCACCAAACTTCAGAATAAGGAACACGTGATTGAAGCCTTACGCAGGGCCAAGTTCAAGTTCCCT
GGCCGCCAGAAGATCCATATCTCCAAGAAGTGGGGCTTTACCAAGTTTAACGCTAATGAATTTGAAGACAAAGTGGCTAA
GAAGTGTCTCATCCAGGATGGTTGTGGAGTCAAATATGTTCCCAATCGTGGCCCTCTGGACAGGTGGCGAGCTCTGCACT
CCTGA

Alignment

ORF - retro_fcat_81 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.0 %
• Parental protein coverage: 89.29 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARI
          MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARI
Retrocopy MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARI

Parental  CANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRT
          CANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRT
Retrocopy CANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRT

Parental  KLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYI
          KLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNA.EFED.VA.K.LI.DGCGVKY.
Retrocopy KLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNANEFEDKVAKKCLIQDGCGVKYV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	140.94 RPM
SRP017611_kidney	0.10 RPM	626.90 RPM
SRP017611_liver	0.00 RPM	492.21 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_81 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_81 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 18 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000011822	5 retrocopies	retro_cjac_156, retro_cjac_174, retro_cjac_260, retro_cjac_277, retro_cjac_61,
Felis catus	ENSFCAG00000011395	1 retrocopy	retro_fcat_81 ,
Macropus eugenii	ENSMEUG00000013163	3 retrocopies	retro_meug_1839, retro_meug_5, retro_meug_547,
Monodelphis domestica	ENSMODG00000008731	2 retrocopies	retro_mdom_177, retro_mdom_829,
Oryctolagus cuniculus	ENSOCUG00000015919	2 retrocopies	retro_ocun_107, retro_ocun_147,
Rattus norvegicus	ENSRNOG00000027149	5 retrocopies	retro_rnor_1007, retro_rnor_1090, retro_rnor_270, retro_rnor_2998, retro_rnor_482,