RetrogeneDB ID: retro_fcat_168

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: A1:106064336..106064655(+)
• Located in intron of: ENSFCAG00000026174

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSFCAG00000026097
• Aliases: None
• Description: None

Sequence

>retro_fcat_168
GTGCAGGTGGAGACTATCTCCCCCAGAGATGGGCTACTGTCCCAAAGCATGGCCAGACCTGTGTGGTGCACGACACAGGG
ATTCTTGAAGATAGAAAGAAATTTGATCCATTCCAGAACAGAAAGAAGCTCTTTAAGTTTATGCTAGGGAAGCAGGAGAT
GATCTGAGGCTAGAAAGAAGGCGTTGCCCCCATAAGTATGGGTCAGAAAGCCAAAATATCTCCCCAGACTATGACTACAG
TGCTCCTAGGCACCCAGGCATCACCCCACCAAATGCCACTCTTGTTTTTGTCCTTGACATGGAGCTTCTGAAATTGGAA

Alignment

ORF - retro_fcat_168 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.27 %
• Parental protein coverage: 98.15 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  VQVETISPGDG-RTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSV-G
          VQVETISP.DG..T.PK.GQTCVVH.TG.LED.KKFD....R.K.FKFMLGKQE.I.G..EGVA..S..G
Retrocopy VQVETISPRDG<ATVPKHGQTCVVHDTGILEDRKKFDPFQNRKKLFKFMLGKQEMI*G*KEGVAPISM<G

Parental  QRAKLTISPDYAYGATGHPGIIPPNATLVF--DVELLKLE
          ......ISPDY.Y.A..HPGI.PPNATLVF..D.ELLKLE
Retrocopy SESQ-NISPDYDYSAPRHPGITPPNATLVFVLDMELLKLE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	324.00 RPM
SRP017611_kidney	0.00 RPM	126.86 RPM
SRP017611_liver	0.00 RPM	37.30 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_168 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_168 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 14 parental genes, and 23 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000008303	4 retrocopies	retro_btau_1220, retro_btau_1265, retro_btau_128, retro_btau_1760,
Ciona savignyi	ENSCSAVG00000006859	1 retrocopy	retro_csav_11,
Echinops telfairi	ENSETEG00000007454	1 retrocopy	retro_etel_2059,
Felis catus	ENSFCAG00000026097	2 retrocopies	retro_fcat_168 , retro_fcat_751,
Felis catus	ENSFCAG00000027304	1 retrocopy	retro_fcat_1894,
Homo sapiens	ENSG00000088832	1 retrocopy	retro_hsap_1198,
Gorilla gorilla	ENSGGOG00000001729	3 retrocopies	retro_ggor_1494, retro_ggor_2344, retro_ggor_933,
Macaca mulatta	ENSMMUG00000015996	1 retrocopy	retro_mmul_10,
Monodelphis domestica	ENSMODG00000019554	2 retrocopies	retro_mdom_151, retro_mdom_733,
Mustela putorius furo	ENSMPUG00000017946	1 retrocopy	retro_mputfur_1649,
Pteropus vampyrus	ENSPVAG00000013840	1 retrocopy	retro_pvam_1367,
Sus scrofa	ENSSSCG00000007188	1 retrocopy	retro_sscr_98,
Tursiops truncatus	ENSTTRG00000003547	3 retrocopies	retro_ttru_1227, retro_ttru_802, retro_ttru_904,
Vicugna pacos	ENSVPAG00000011511	1 retrocopy	retro_vpac_171,