RetrogeneDB ID: retro_etel_834

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_172429:3338..3620(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSETEG00000011522
• Aliases: None
• Description: None

Sequence

>retro_etel_834
TCTCTGAACAGATCAACCAAGAATTCTGGATCTAACTATATAAAAAAGCTTTCTCATGCAAATATCTGCAAAACAAAGAG
TGACTCTTCCCACGAAGGCTGCACTCAGATTATCGCCATTCAGCGGCTTCCCCTGTTACCTTCTGTGCCCCGCTCCAAGA
AAAATTATTGGGGTTCCTTCATGGACACCCAGGAAATGCCTCTGAGGACACTCCAGGCTCGGGTGATTCTGATCTTCCTT
GCAATGGTTAGTGCTGCTTTCCTCACCAAATTAATACAGAAA

Alignment

ORF - retro_etel_834 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.26 %
• Parental protein coverage: 80.17 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SANQYEKAFSSKYLQNWSPSKSTK-ESISSHEGYTQIIADDRGHLLPSVPRSKASPWGSFMGTWQMPLKI
          S.N...K...S.Y....S.....K..S.SSHEG.TQIIA..R..LLPSVPRSK...WGSFM.T..MPL..
Retrocopy SLNRSTKNSGSNYIKKLSHANICKTKSDSSHEGCTQIIAIQRLPLLPSVPRSKKNYWGSFMDTQEMPLRT

Parental  PPARVTLTSRTMASAASLTKWIQK
          ..ARV.L....M.SAA.LTK.IQK
Retrocopy LQARVILIFLAMVSAAFLTKLIQK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_834 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000004753	1 retrocopy	retro_cjac_192,
Echinops telfairi	ENSETEG00000011522	1 retrocopy	retro_etel_834 ,
Tupaia belangeri	ENSTBEG00000015510	1 retrocopy	retro_tbel_1205,