RetrogeneDB ID: | retro_etel_722 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | scaffold_155048:756..1694(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ERLIN2 | ||
| Ensembl ID: | ENSETEG00000016394 | ||
| Aliases: | None | ||
| Description: | ER lipid raft associated 2 [Source:HGNC Symbol;Acc:1356] |
Retrocopy-Parental alignment summary:
>retro_etel_722
ATGACTCAAGCCCGGGTTCTGGTGGCTGCAGTGGTGGGACTGGTGGCTGTCCTCCTGTACGCCTCCATCCATAAGATCGA
AGAAGGACACCTGGCTGTGTACTACATGGGTGGAGCTTTACTAACTAGCCCCAGTGGACCAGGCTATCATATCATGTTGC
CTTTCATAACTACGTTCAGATCTGTGCAGACAACACTACAAACTGATGAAGTTAAAAACGTGCCTTGTGGAACAAGTGGT
GGAGTCATGATCTATATTGACTGAATAGAAGTGGTTAATATGTTGGCTCCTTATGCAGTGTTTGATATCGTGAGGAACTA
CACTGCAGATTGTGACAAGACCTTAATCTTTAATAAAATCCACCACGAGCTGAATCAGTTTTGCAGTGCCCACACACTTC
AAGACGTTTACATTGAATTGTTTCATCAAATAGATGAAAACCTGAAGCAAGCTCTGCAGAAAGATTTAAACCTCATGGCT
CCAGGTCTCACCATCCAGGCTGTGCGTGTTACAAAACCCAATATCCCAGAAGCCATAAGAAGAAATTTTGAGTTAATGGG
GAGGCTGAGAAAACAAAACTTCTTATTGCTGTACAGAAACAAAAAGTCGTGGAGAAAGAAGCCAAGACAGAGAGGAAGAA
GGCCATTATAGAAGCCGAGAAGATTGCCCAGGTGGCAAAAATTCAATTTCAGCAGAAGGTGATGGAGAAGGAAACCGAAC
AGCGCATTTCTGAAATTGAAGATGCTGCATTCTTGGCTGGAGAGAAGGTGAAAGCAGATGCTGAGTTTTATGCTGCACAC
AAATATGCCACCTCCAACAAGCACAAATTGACCCCGGAGTACCTGGAGCTCAAAAAGTACCAGGCCATCACTTCGAAGAG
TACAATCTACTTTGGCAGCAGCATCCCTAGCATGCTTGTGGACTCCTCCTGCGCTCTG
ORF - retro_etel_722 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 72.93 % |
| Parental protein coverage: | 92.04 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | MAQLGAVVALAAGFFCSSLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTTLQTDE |
| M.Q....VA...G.....L....HKIEEGH..VYY.GGALLTS.SGPG.H.MLPFIT...SVQTTLQTDE | |
| Retrocopy | MTQARVLVAAVVGLVAVLLYASIHKIEEGHLAVYYMGGALLTSPSGPGYHIMLPFITTFRSVQTTLQTDE |
| Parental | VKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYTADYDKALIFNKIHHELNQFCSVHTLQEVYIEL |
| VKNVPCGTSGGVMIY.D.IEVVN.L.P.AV.DIV.NYTAD.DK.LIFNKIHHELNQFCS.HTLQ.VYIEL | |
| Retrocopy | VKNVPCGTSGGVMIYID*IEVVNMLAPYAVFDIVRNYTADCDKTLIFNKIHHELNQFCSAHTLQDVYIEL |
| Parental | FDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYELM-ESEKTKLLI-AAQKQKVVEKEAE |
| F.QIDENLK.ALQ.DL..MAPGL.IQAVRVTKPNIPEAIRRN.ELM....K...L..A.QKQKVVEKEA. | |
| Retrocopy | FHQIDENLKQALQKDLNLMAPGLTIQAVRVTKPNIPEAIRRNFELMGRLRKQNFLL<AVQKQKVVEKEAK |
| Parental | TERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEIEDAAFLAREKAKADAECYTAMKIAEANKLKLTP |
| TERKKA.IEAEK.AQVA.I...QKVMEKETE..ISEIEDAAFLA.EK.KADAE.Y.A.K.A..NK.KLTP | |
| Retrocopy | TERKKAIIEAEKIAQVAKIQFQQKVMEKETEQRISEIEDAAFLAGEKVKADAEFYAAHKYATSNKHKLTP |
| Parental | EYLQLMKYKAIASNSKIYFGKDIPNMFVDSAGSL |
| EYL.L.KY.AI.S.S.IYFG..IP.M.VDS...L | |
| Retrocopy | EYLELKKYQAITSKSTIYFGSSIPSMLVDSSCAL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_722 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000016394 | 3 retrocopies |
retro_etel_1513, retro_etel_616, retro_etel_722 ,
|