RetrogeneDB ID: | retro_etel_1513 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | scaffold_276453:96..1010(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ERLIN2 | ||
| Ensembl ID: | ENSETEG00000016394 | ||
| Aliases: | None | ||
| Description: | ER lipid raft associated 2 [Source:HGNC Symbol;Acc:1356] |
Retrocopy-Parental alignment summary:
>retro_etel_1513
GCTGCAGTGGTGGGACTGGTGGCTGTCCTCCTGTACACCTCCATCCATAAGATCGAAGAAGGACACCTGGCTGTGTACTA
CAGGGGTGGAGCTTTACTAACTAGCCCCAGTGGACCAGGCTATCATATCATGTTGCCTTTCATAACTACGTTCAGATCTG
TGCAGACAACACTACAAACTGATGAAGTTAAAAACGTGCCTTGTGGAACAAGTGGTGGAGTCATGATCTATATTGACCGG
AACAGAAGTGGTGAATATGTTGGCTCCTTATGCAGTGTTTGATATCGTGAGGAACTACACTTGCAGATTATGACAAGACC
TTAATCTTTAATAAAATCCACCACGAGCTGAACCAGTTTTGCAGTGCCCACACACTTCAAGAAGTTTACATTGAATTGTT
TGATCAAATAGATGAAAACCTGGAGCAAGCTCTGCAGAAAGATTTAAACCTCATGGCTCCGGGTCTCACCATCCAGGCTG
TGCGTGTTACAAAACCCAATATCCCAGAAGCCATACGAAGAAATTTTGAGTTAATGGAGGCTGAGAAAACAAAACTTCTT
ATTGCTGTACAGAAACAAAAAGTCGTGGAGAAAGAAGCCGAGACAGAGAGGAAGAAGGCCATTATAGAAGCCGAGAAGAT
TGCCCAGGTGGCAAAAATTCAATTTCAGCAGAAGGTGATGGAGAAGGAAACCGAACAGCGCATTTCTGAAATTGAAGATG
CTACATTCTTGGCTGGAGAGAAGGCGAAAGCAGATGCTGAGTTTTATGCTACACACAAATATGCCACCGCCAACAAGCAC
AAATTGACCCCGGAGTACCTGGAGCTCAAAAAGTACCAGGCCATCGCTTCGAACAGTACGATCTACTTTGGCAGCAGCAT
CCCTAGCATGCTTGTGGACACCTCCTGCGCTCTG
ORF - retro_etel_1513 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 77.45 % |
| Parental protein coverage: | 89.68 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | ALAAGFFCSSLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTTLQTDEVKNVPCGT |
| A...G.....L....HKIEEGH..VYYRGGALLTS.SGPG.H.MLPFIT...SVQTTLQTDEVKNVPCGT | |
| Retrocopy | AAVVGLVAVLLYTSIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQTTLQTDEVKNVPCGT |
| Parental | SGGVMIYFDR-IEVVNFLVPNAVYDIVKNYT-ADYDKALIFNKIHHELNQFCSVHTLQEVYIELFDQIDE |
| SGGVMIY.DR..EVVN.L.P.AV.DIV.NYT.ADYDK.LIFNKIHHELNQFCS.HTLQEVYIELFDQIDE | |
| Retrocopy | SGGVMIYIDR>TEVVNMLAPYAVFDIVRNYT>ADYDKTLIFNKIHHELNQFCSAHTLQEVYIELFDQIDE |
| Parental | NLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAETERKKALI |
| NL..ALQ.DL..MAPGL.IQAVRVTKPNIPEAIRRN.ELME.EKTKLLIA.QKQKVVEKEAETERKKA.I | |
| Retrocopy | NLEQALQKDLNLMAPGLTIQAVRVTKPNIPEAIRRNFELMEAEKTKLLIAVQKQKVVEKEAETERKKAII |
| Parental | EAEKVAQVAEITYGQKVMEKETEKKISEIEDAAFLAREKAKADAECYTAMKIAEANKLKLTPEYLQLMKY |
| EAEK.AQVA.I...QKVMEKETE..ISEIEDA.FLA.EKAKADAE.Y...K.A.ANK.KLTPEYL.L.KY | |
| Retrocopy | EAEKIAQVAKIQFQQKVMEKETEQRISEIEDATFLAGEKAKADAEFYATHKYATANKHKLTPEYLELKKY |
| Parental | KAIASNSKIYFGKDIPNMFVDSAGSL |
| .AIASNS.IYFG..IP.M.VD....L | |
| Retrocopy | QAIASNSTIYFGSSIPSMLVDTSCAL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1513 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000016394 | 3 retrocopies |
retro_etel_1513 , retro_etel_616, retro_etel_722,
|