RetrogeneDB ID: retro_etel_573

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: GeneScaffold_9115:12945..13474(-)
• Located in intron of: ENSETEG00000020232

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ANXA1
• Ensembl ID: ENSETEG00000018299
• Aliases: None
• Description: annexin A1 [Source:HGNC Symbol;Acc:533]

Sequence

>retro_etel_573
TTTGTTGAAACTGAGAAACAGGAAGATGTTAAAACTGTGACAGGCTCCAAAGTTGGCCCTGGCTCCGCAGTGAGCCCTTA
TCCTCCCTGCAATCCAACCTCCGGTGCTGCTGCCTTGCCCAAAGCCGTCACAGGTAAAGGTGGGGATGACGGCACCATCA
CTGACATTTTGCCTAAGAGAACTGATGCACAACGCCGGCACATCAAAGCTGCAGACCTCCGAGAGAAAGGAAATCCCCTG
GACGAAGCTGGAAAGAAAGCCTTCACAGGCCACCTCCAGGAAGTTGCCTTGGCTCTAGGGGAAACTCCCGCCCAGTTTGA
TGCTGATGAAACTTCGCGTTGCCATGAAGGGCCTTGGCACCGATGAGGGCACGCTCATTGAAATGGTGGCATCAAGAACT
GACAGAGAGATCAGGGACATTAACAGAGTCTACAGAGATGAACTGACGAGAGGTCTGGCCGAAGACATCCCCTCCGACAC
ATCCGTGGTTTTCCCAAGGCTTTGTTTTCTCTCCGCCAGGGGTGACCGG

Alignment

ORF - retro_etel_573 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.19 %
• Parental protein coverage: 61.32 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  FIENEEPEYIKTVKGSKGGPGSAVSPYPAFNPASDVAALHKAITVKGVDEATIIDILTKRTNAQRQQIKA
          F.E.E..E..KTV.GSK.GPGSAVSPYP..NP.S..AAL.KA.T.KG.D..TI.DIL.KRT.AQR..IKA
Retrocopy FVETEKQEDVKTVTGSKVGPGSAVSPYPPCNPTSGAAALPKAVTGKGGDDGTITDILPKRTDAQRRHIKA

Parental  AYLQEKGKPLDEALKKAFTGHLEEVALALLKTPAQFDADE-LRAAMKGLGTDEDTLIEILASRTNREIRD
          A.L.EKG.PLDEA.KKAFTGHL.EVALAL..TPAQFDADE.LR.AMKGLGTDE.TLIE..ASRT.REIRD
Retrocopy ADLREKGNPLDEAGKKAFTGHLQEVALALGETPAQFDADE>LRVAMKGLGTDEGTLIEMVASRTDREIRD

Parental  INRVYRDELKRDLAKDITSDTSGDFQKALLSLAKGDR
          INRVYRDEL.R.LA.DI.SDTS..F.......A.GDR
Retrocopy INRVYRDELTRGLAEDIPSDTSVVFPRLCFLSARGDR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_573 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000015978	1 retrocopy	retro_btau_544,
Echinops telfairi	ENSETEG00000002187	3 retrocopies	retro_etel_1728, retro_etel_370, retro_etel_901,
Echinops telfairi	ENSETEG00000018299	1 retrocopy	retro_etel_573 ,
Otolemur garnettii	ENSOGAG00000009311	1 retrocopy	retro_ogar_108,
Pteropus vampyrus	ENSPVAG00000006489	2 retrocopies	retro_pvam_536, retro_pvam_713,