RetrogeneDB ID: | retro_etel_563 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | GeneScaffold_9065:4668..5345(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSETEG00000011180 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | FBXL2 | ||
| Ensembl ID: | ENSETEG00000016506 | ||
| Aliases: | None | ||
| Description: | F-box and leucine-rich repeat protein 2 [Source:HGNC Symbol;Acc:13598] |
Retrocopy-Parental alignment summary:
>retro_etel_563
GAAGATGAAGCTCTAAATACATAGGTGCACACTGTCCTGAACTGGTGGCTTTGAACTTACAGACTTGCTTGCAAATCACA
GATGATGGTCTCATTACAATATGCAGGGGGTGCCATAAGTTACAGTCCCTCTGTGCCTCTGGCTGCTCCAACATCACAGA
TGCCATCCTTAATGCTCTAGGTCAGAACTGCCCACGGCTTAAAATACTAGAAGTGGCAAGATGTTCTCAGTTACCAGATG
TGGGCTTTACCACTCTGGCTAGGAATTGCCATGAACTTGAAAAGATGGATCTGGAAGAATGTGTTCAGATAACAGACTGC
ACATTAATCCAACTTTCTATGCATTGCCCTCATCTTCAAGTATTGAGTCTTTCTCACTGTGAGCTGATCACAGATGATGG
AATTCATCACCTGGGAAATGGGGCTCATGACCAGCTGGAAGTGACTGAGCTGGACAATTGCCCACTAATCACAGATGCCT
CCCTGGAGCACTTGAAGAGTTGTCACAGGCTCGAGAGCATAGAACTCTATGACTGCCAGCAAGTCACACGGGCTGGAACC
AAGAGACTCAGGACCCAATTACCCAATATTAAAGTCCACGCCTACTTCGCACCTGTCACTCCACCCCCATCAGTAGGGGG
CAGCAGACTGCGATTCTGCAGATGCTGCATCATCCTA
ORF - retro_etel_563 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 71.62 % |
| Parental protein coverage: | 57.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | EDEAL-KHIQNYCHELVSLNLQSCSRITDEGVVQICRGCQRLQALCVSGCSNLTDASLTALGLNCPRLQI |
| EDEAL.K.I...C.ELV.LNLQ.C..ITD.G...ICRGC..LQ.LC.SGCSN.TDA.L.ALG.NCPRL.I | |
| Retrocopy | EDEAL<KYIGAHCPELVALNLQTCLQITDDGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLKI |
| Parental | LEAARCSHLTDAGFTLLARNCHDLEKMDLEECVLITDSTLVQLAIHCPKLQALSLSHCELITDDGILHLS |
| LE.ARCS.L.D.GFT.LARNCH.LEKMDLEECV.ITD.TL.QL..HCP.LQ.LSLSHCELITDDGI.HL. | |
| Retrocopy | LEVARCSQLPDVGFTTLARNCHELEKMDLEECVQITDCTLIQLSMHCPHLQVLSLSHCELITDDGIHHLG |
| Parental | NSTCGHTRLRVLELDNCLLITDAALEHLESCQGLERLELYDCQQVTRAGIKRMRAQLPHVKVHAYFAPVT |
| N....H..L.V.ELDNC.LITDA.LEHL.SC..LE..ELYDCQQVTRAG.KR.R.QLP..KVHAYFAPVT | |
| Retrocopy | NG--AHDQLEVTELDNCPLITDASLEHLKSCHRLESIELYDCQQVTRAGTKRLRTQLPNIKVHAYFAPVT |
| Parental | PPTAVGGSGQRLCRCCVVL |
| PP..VGGS..R.CRCC..L | |
| Retrocopy | PPPSVGGSRLRFCRCCIIL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_563 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000016506 | 2 retrocopies |
retro_etel_448, retro_etel_563 ,
|