RetrogeneDB ID: | retro_etel_448 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | GeneScaffold_7373:9285..9964(+) | ||
| Located in intron of: | ENSETEG00000017707 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | FBXL2 | ||
| Ensembl ID: | ENSETEG00000016506 | ||
| Aliases: | None | ||
| Description: | F-box and leucine-rich repeat protein 2 [Source:HGNC Symbol;Acc:13598] |
Retrocopy-Parental alignment summary:
>retro_etel_448
GAAGATGAAGCTCAGAAGTACATAGGTGCACATTGGCCTGAAACTGATGACTTTGAACTTACAGACTTGCTTGCAAACCA
CTGATGACGGTCTCATTATTATATGCCGAGGGTACCGTAAGTTACAGTCCCTCTGTGCCTCTGGCTGCTCCAACATCACA
GATACCATCCTGGATGCTCTAGGTCCGAACTGCCCACGGCTTAGAATACTAGAAGTGGCAAGACATTCTCAGTTAACAGA
TATGGGCTTTACCACTCTGGCTAGGAATTGCCATGAACTTGAAAAGATGGATCTGGAAGAATGTGTTCAGATAACAGACA
GCACATTAATCCAACTTTCTATACATTGACCTGGTCTTCAAGTATTGAGTCTTTCTCACGGTGAGCTGATCACAGATGAT
GGAATTCGTCACCTGGGAAATGGCGCCCATGACCAGCTGGAAGTGACTGAGCTGGACAATTGCCCACTAATCACAGATGC
GTCCCTGGAGCGCTTGAAGAGTTGTCGCAGTCTCGAGAGGATAGAACTCTATGACTGCCAGCAAGTCACATGGGCTGGAA
CCAAGAGACTTGGGGCCCATTTACCCAATATGAAAGTCCACGCCTACTTCGCACCTGTCACTCCACCCCCATCAGTAGGG
GGCAGCAGACCGCGATCATGCAGATGCTGCATCATCCTA
ORF - retro_etel_448 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 68.12 % |
| Parental protein coverage: | 57.0 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | EDEALKHIQNYCHE-LVSLNLQSCSRITDEGVVQICRGCQRLQALCVSGCSNLTDASLTALGLNCPRLQI |
| EDEA.K.I.....E.L..LNLQ.C...TD.G...ICRG...LQ.LC.SGCSN.TD..L.ALG.NCPRL.I | |
| Retrocopy | EDEAQKYIGAHWPE>LMTLNLQTCLQTTDDGLIIICRGYRKLQSLCASGCSNITDTILDALGPNCPRLRI |
| Parental | LEAARCSHLTDAGFTLLARNCHDLEKMDLEECVLITDSTLVQLAIHCPKLQALSLSHCELITDDGILHLS |
| LE.AR.S.LTD.GFT.LARNCH.LEKMDLEECV.ITDSTL.QL.IH.P.LQ.LSLSH.ELITDDGI.HL. | |
| Retrocopy | LEVARHSQLTDMGFTTLARNCHELEKMDLEECVQITDSTLIQLSIH*PGLQVLSLSHGELITDDGIRHLG |
| Parental | NSTCGHTRLRVLELDNCLLITDAALEHLESCQGLERLELYDCQQVTRAGIKRMRAQLPHVKVHAYFAPVT |
| N....H..L.V.ELDNC.LITDA.LE.L.SC..LER.ELYDCQQVT.AG.KR..A.LP..KVHAYFAPVT | |
| Retrocopy | NG--AHDQLEVTELDNCPLITDASLERLKSCRSLERIELYDCQQVTWAGTKRLGAHLPNMKVHAYFAPVT |
| Parental | PPTAVGGSGQRLCRCCVVL |
| PP..VGGS..R.CRCC..L | |
| Retrocopy | PPPSVGGSRPRSCRCCIIL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_448 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000016506 | 2 retrocopies |
retro_etel_448 , retro_etel_563,
|