RetrogeneDB ID: retro_etel_1596

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_281858:290..1261(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZNF131
• Ensembl ID: ENSETEG00000015357
• Aliases: None
• Description: zinc finger protein 131 [Source:HGNC Symbol;Acc:12915]

Sequence

>retro_etel_1596
GTTGAAATTGAGGTGGAGATTGCCGAAGACACAATTGAAGTGGAAGGTGAAGGCGTTGAAACATTGGAGGAAGTGGCTTC
GGCCAAGGAATCTGTAAAGTACACTCAAAGCACAGGGTCCTCCGATGATTCCGCTTTAGCTCTTTTGGCAGATATTACCA
GCAAGTATCATCAGGGTGATAGAAAAGGGCATCTTAAAGAAGGTGGATGTGCATCTGACCCCACAATCAAACAGGAGCAC
ATGAAATCACACTCCACGGAGAGTTTCAAGTGTGCAATATGCAATGAAAGGTATCTGTGGGAGAGCGCATGGAAACAGCA
CCTCAATTGCTACCACCTGGAAGAAGGTAGTGCCAGTAAGAAGCAAAGAACTGGGGAAAAATTCCTATTTGTCAGTATTG
TGAGAAACAGTTTGACCACTTTGGACACTTTAAAGAGCATTTTCAAAAACATACAGGTGAGAAACCCTTTGAATGTTCAA
ATTGTCATGAGCGATTTGCTAGAAATAGCACACTGAAATGTCACCTGACAGCATGCCAAACTGGAGTAGGGGCAAAAAAG
GGAAGAAAGAAGCTTTATGAATGTCAGGTTTGTAACAATGTGTTTAACAGCTGGAACCAGTTTAAAGATCACTTAGTAAT
TCACACTGGAGATAAACCCAACCATTGTACTCTATGTGATTTGTGGTTTATGCAAGGAAATGAATTAAGGAGACATCTCA
ATGATGCCCATAACATTTCTGAACATCTAATAACTGAAGAAATTCTTCCAGTAGAAACACACTTGCAAGCTGAACCTGTA
ACATCAATGATAATTATAGAACAAGTTGGGAAGGTACATGTGCTACCATTGCTTCAGGTCCAAGTGGATTCAGCACAAGT
AACTGTGGAACAGGTCCATCCAGATCTGCTCCAGGACAGTCAAATGCACGATTCACATATCAGTGAGCTTCCAGAGCAGG
TCCAGGTGAGT

Alignment

ORF - retro_etel_1596 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.31 %
• Parental protein coverage: 64.99 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  VEIEVEIAEDTIEVEGEEFDTFEEVAWAKQSIKYIQSTGSSDDSALALLADITSKYRQGDRKGHLKEGGC
          VEIEVEIAEDTIEVEGE...T.EEVA.AK.S.KY.QSTGSSDDSALALLADITSKY.QGDRKGHLKEGGC
Retrocopy VEIEVEIAEDTIEVEGEGVETLEEVASAKESVKYTQSTGSSDDSALALLADITSKYHQGDRKGHLKEGGC

Parental  ASDPTIKQEHMKSHSTESFKCEICNKRYLRESAWKQHLNCYHLEEGGASKKQRTGKK-IHICQYCEKQFD
          ASDPTIKQEHMKSHSTESFKC.ICN.RYL.ESAWKQHLNCYHLEEG.ASKKQRTG.K.I.ICQYCEKQFD
Retrocopy ASDPTIKQEHMKSHSTESFKCAICNERYLWESAWKQHLNCYHLEEGSASKKQRTGEK<IPICQYCEKQFD

Parental  HFGHFKEHLRKHTGEKPFECSNCHER-ARNSTLKCHLTACQTGVGAKKGRKKLYECQVCNSVFNSWDQFK
          HFGHFKEH..KHTGEKPFECSNCHER.ARNSTLKCHLTACQTGVGAKKGRKKLYECQVCN.VFNSW.QFK
Retrocopy HFGHFKEHFQKHTGEKPFECSNCHERFARNSTLKCHLTACQTGVGAKKGRKKLYECQVCNNVFNSWNQFK

Parental  DHLVIHTGDKPNHCTLCDLWFMQGNELRRHLNDAHNISERLITEEILSVETHLQTEPVTSMTIIEQVGKV
          DHLVIHTGDKPNHCTLCDLWFMQGNELRRHLNDAHNISE.LITEEIL.VETHLQ.EPVTSM.IIEQVGKV
Retrocopy DHLVIHTGDKPNHCTLCDLWFMQGNELRRHLNDAHNISEHLITEEILPVETHLQAEPVTSMIIIEQVGKV

Parental  HVLPLLQVQVDSAQVTVEQVHPDLLQDSQMHDSHISELPEQVQVS
          HVLPLLQVQVDSAQVTVEQVHPDLLQDSQMHDSHISELPEQVQVS
Retrocopy HVLPLLQVQVDSAQVTVEQVHPDLLQDSQMHDSHISELPEQVQVS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_1596 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000001280	1 retrocopy	retro_cjac_2484,
Echinops telfairi	ENSETEG00000015357	1 retrocopy	retro_etel_1596 ,