RetrogeneDB ID: retro_etel_1505

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_275712:6035..6218(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ACYP2
• Ensembl ID: ENSETEG00000017888
• Aliases: None
• Description: acylphosphatase 2, muscle type [Source:HGNC Symbol;Acc:180]

Sequence

>retro_etel_1505
ATGTCCTCCAAAGAGTCGCTCAAGTCCGTGGACTATGAGGTGTTCAGCAACGTGCAGGGAGTTTGCTTCAGAATGTACAC
AGAAGGAGAAGCAAAGAAACTAGGAGTGGTTGACTGCGTGAAGAACACCAGCAGAGGCACTGTGACAGGCCAAGTGCAAG
GCCCTGAGGAGAAAGTCAACTCC

Alignment

ORF - retro_etel_1505 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.61 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSANESLKWVAYEVLGNMQGVCFRMYTEGEAKKLGVVGWVKNTSKGTVTGQVQGPEEKVNS
          MS..ESLK.V.YEV..N.QGVCFRMYTEGEAKKLGVV..VKNTS.GTVTGQVQGPEEKVNS
Retrocopy MSSKESLKSVDYEVFSNVQGVCFRMYTEGEAKKLGVVDCVKNTSRGTVTGQVQGPEEKVNS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_1505 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000023070	1 retrocopy	retro_cfam_57,
Echinops telfairi	ENSETEG00000017888	1 retrocopy	retro_etel_1505 ,
Oryctolagus cuniculus	ENSOCUG00000015408	1 retrocopy	retro_ocun_1372,
Tupaia belangeri	ENSTBEG00000013671	1 retrocopy	retro_tbel_935,