RetrogeneDB ID: retro_etel_1046

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_203926:9238..9697(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSETEG00000000814
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: WDR61
• Ensembl ID: ENSETEG00000004321
• Aliases: None
• Description: WD repeat domain 61 [Source:HGNC Symbol;Acc:30300]

Sequence

>retro_etel_1046
AGTATAGCCTATAGTCCTGACGGGAAGTACCTGGCCAGTGGAGCCATAGACGGCATCATCAACATTTTCGACATAGCCAC
CGGGAAACTTCTGCACACGCTGGAAGGCCACGCCATGCCCATTCGCTCGTTGACCTTCTCCCCGGATTCTCAGCTCCTCG
TCACCGCTTCAGACGATGGCTACATCAAGATCTATGATGTACAACATGCCAATTTAGCTGGCACGCTGAGTGGCCACGCA
TCCTGGGTGCTGAACGTGGCCTTCTGCCCTGATGACACTCACTTTCTCTCCAGTTCCTCTGACAAAAGTGTGAAAGTTTG
GGATGTTGGCACGAGGACTTGCATCCACACCTTCTTTGATCACCAGGATCAGGTCTGGGGAGTAAAGTACAATGGAAATG
GTTCAAAAATTGTGTCAGTTGGGGATAACCAGGAAATTCACATCTATGATTGTCCAATT

Alignment

ORF - retro_etel_1046 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.35 %
• Parental protein coverage: 50.66 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA
          SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA
Retrocopy SIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA

Parental  NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQVWGVKYNGNGSKIVSV
          NLAGTLSGHASWVLNVAFCPDDTHF.SSSSDKSVKVWDVGTRTCIHTFFDHQDQVWGVKYNGNGSKIVSV
Retrocopy NLAGTLSGHASWVLNVAFCPDDTHFLSSSSDKSVKVWDVGTRTCIHTFFDHQDQVWGVKYNGNGSKIVSV

Parental  GDNQEIHIYDCPI
          GDNQEIHIYDCPI
Retrocopy GDNQEIHIYDCPI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_1046 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000015944	1 retrocopy	retro_btau_702,
Echinops telfairi	ENSETEG00000004321	1 retrocopy	retro_etel_1046 ,
Echinops telfairi	ENSETEG00000018534	2 retrocopies	retro_etel_1750, retro_etel_2174,
Macropus eugenii	ENSMEUG00000015991	1 retrocopy	retro_meug_744,
Oryctolagus cuniculus	ENSOCUG00000009040	1 retrocopy	retro_ocun_1570,
Tupaia belangeri	ENSTBEG00000009390	1 retrocopy	retro_tbel_48,