RetrogeneDB ID: retro_chof_732

Retrocopy location

• Organism: Sloth (Choloepus hoffmanni)
• Coordinates: scaffold_14148:7413..7836(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KLRG1
• Ensembl ID: ENSCHOG00000010061
• Aliases: None
• Description: killer cell lectin-like receptor subfamily G, member 1 [Source:HGNC Symbol;Acc:6380]

Sequence

>retro_chof_732
GTCCCTACTGCACCCCAGGCCCAGAATGACTGCAGAGGACAGCAAAAAGCACCTTCCAGAGCCTCTTTTTCTTGCCATGT
GGCAGTAGTTTGGGGGCTTTTTCACTGTAATTCCTGTGAGTTTGTGACAATACCAATAGATTCTGTACCAGGGCTCCAAC
CACTTCCACTTGTGCTAGCTGTCCTAGCTGCCCAGAACTCTGGATGAGATATGGTGACCATCGTTACTCCTTCTCAGTAG
TGAAGACGGACTGGAATTCTAGTCTGGAATGCTTCTTAGCAAAAGACTCACATCTCCTTATATTTAGGGACAATCAGAAA
ATGAGCCTGCTCAAGGATCTCCTCAGTGGTGACTTTTACTGGGGTTGATCAGAGGAACAATTCTGGTTGGAGATGGGAAG
ATGAATCAGCCCTAAACTTCTCC

Alignment

ORF - retro_chof_732 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.53 %
• Parental protein coverage: 71.35 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  LPTAPQAQNDFRQQQKASSRPSLSCYVAIILGL-LTVILVSLLLYQWIVSQGSSY-STCASCP---DLWM
          .PTAPQAQND.R.QQKA.SR.S.SC.VA...GL..TVI.VSL..YQ.I..QGS...STCASCP....LWM
Retrocopy VPTAPQAQNDCRGQQKAPSRASFSCHVAVVWGL>FTVIPVSL*QYQ*ILYQGSNH>STCASCPSCPELWM

Parental  RHGDHCYYFSVEKKDWNSSLEFCLAKDSQLLMFRDNREMNLCKDFLSNDFYW-VGLRNNSGWRWEDGSAL
          R.GDH.Y.FSV.K.DWNSSLE..LAKDS.LL.FRDN..M.L.KD.LS.DFYW.V..RNNSGWRWED.SAL
Retrocopy RYGDHRYSFSVVKTDWNSSLECFLAKDSHLLIFRDNQKMSLLKDLLSGDFYW>VDQRNNSGWRWEDESAL

Parental  NFT
          NF.
Retrocopy NFS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Choloepus hoffmanni was not studied using RNA-Seq expression data.

ChIP-Seq

Choloepus hoffmanni was not studied using ChIP-Seq data.

EST

Choloepus hoffmanni was not studied using EST data.

TSS

Choloepus hoffmanni was not studied using FANTOM5 data.

Lab

retro_chof_732 was not experimentally validated.

Homology

Retrocopy orthology:

Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000010061	2 retrocopies	retro_chof_230, retro_chof_732 ,