RetrogeneDB ID: | retro_chof_230 | ||
Retrocopy location | Organism: | Sloth (Choloepus hoffmanni) | |
| Coordinates: | GeneScaffold_5068:27279..27585(+) | ||
| Located in intron of: | ENSCHOG00000012396 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | KLRG1 | ||
| Ensembl ID: | ENSCHOG00000010061 | ||
| Aliases: | None | ||
| Description: | killer cell lectin-like receptor subfamily G, member 1 [Source:HGNC Symbol;Acc:6380] |
Retrocopy-Parental alignment summary:
>retro_chof_230
GTGAGTTTGCTGCTATACCAGTGGATTCTGAGTGAGAGCTCCAGCTACTCCTCTTGTGCCAGCTGACCCAGATGCCCAGA
CCTCTGGATGAGGTTTCGTGACCATTGTTACTACTTCTTGGTAGAGAAAAAGGACTGGAACTCTAGCCTGGAATTCTGCT
TAGCTAAAGACTCAAAGATCCTTATTTTTACGGACAACCGGGAAATGAGCCTGTGCAAAGAAGTCCTCAGTAATGACTTT
TACTGAGCTGGCCTGAAGAATAATTCTGGTTGGAGGTGGGAAGATGGATCTGCCCTAAACTTCACA
ORF - retro_chof_230 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 80.39 % |
| Parental protein coverage: | 51.56 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | VSLLLYQWIVSQGSSYSTCAS---CPDLWMRHGDHCYYFSVEKKDWNSSLEFCLAKDSQLLMFRDNREMN |
| VSLLLYQWI.S..SSYS.CAS...CPDLWMR..DHCYYF.VEKKDWNSSLEFCLAKDS..L.F.DNREM. | |
| Retrocopy | VSLLLYQWILSESSSYSSCAS*PRCPDLWMRFRDHCYYFLVEKKDWNSSLEFCLAKDSKILIFTDNREMS |
| Parental | LCKDFLSNDFYWVGLRNNSGWRWEDGSALNFT |
| LCK..LSNDFY..GL.NNSGWRWEDGSALNFT | |
| Retrocopy | LCKEVLSNDFY*AGLKNNSGWRWEDGSALNFT |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_230 was not experimentally validated.
Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000010061 | 2 retrocopies |
retro_chof_230 , retro_chof_732,
|