RetrogeneDB ID: | retro_cfam_884 | ||
Retrocopy location | Organism: | Dog (Canis familiaris) | |
| Coordinates: | 2:11518182..11518433(+) | ||
| Located in intron of: | ENSCAFG00000004145 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSCAFG00000029413 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_cfam_884
ATGATCTCTCTGCTTTATACCTGGTGTATTCCCAGAGCTTCCATTTCCATGTGGCACGTCTTTGTTTGTTTTGGGTATCG
CACTTCCCAGCTTATTATTGTCAGAGATTACCAAAAGAAGCCGATGTGACAAAGGATAAAGAGATGACAATACACTGGTT
TAGACAAGCCTCCAAGCAGGACCATCCCTGCGCATTCTTTAACCTTGCAGTGGGAAAACTGAAAAACATAACTGGGTCCA
CTGAACTAGGC
ORF - retro_cfam_884 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 56.98 % |
| Parental protein coverage: | 67.2 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | MISLLYIWLYSQSFHFHVAHLYARFGYPSAQLIVG-QRYLKGAGVVKDEEMAMYWFRQASKQDHPYASF- |
| MISLLY.W...........H....FGY...QLI...QR..K.A.V.KD.EM...WFRQASKQDHP.A.F. | |
| Retrocopy | MISLLYTWCIPRA-SISMWHVFVCFGYRTSQLIIV<QRLPKEADVTKDKEMTIHWFRQASKQDHPCAFFN |
| Parental | LAVGKLKNMTGSMEVG |
| LAVGKLKN.TGS.E.G | |
| Retrocopy | LAVGKLKNITGSTELG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012049_cerebellum | 0 .00 RPM | 0 .08 RPM |
| SRP017611_brain | 0 .00 RPM | 0 .08 RPM |
| SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
| SRP017611_liver | 0 .00 RPM | 0 .07 RPM |
Canis familiaris was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cfam_884 retrocopy.
Canis familiaris was not studied using FANTOM5 data.
retro_cfam_884 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cfam_884 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Canis familiaris | ENSCAFG00000029413 | 1 retrocopy |
retro_cfam_884 ,
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