RetrogeneDB ID: | retro_cfam_1432 | ||
Retrocopy location | Organism: | Dog (Canis familiaris) | |
| Coordinates: | 31:6567132..6567402(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSCAFG00000028564 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_cfam_1432
AGAATTTATTTAAGATATCTGAAGGAGCGTAAGAGTAAAGTCTGCCTTCCAGTGGTTAAGAGGCTTGACAAAGAGTACTG
GAGAACGAACGTGCAAGCGATAGTGATGGCTCTGGAGTTGGAAAACGGGTTACACAAGCTCCTGCAAGACCTGCAGAACT
TGGCTTCTCAGAAGAATGAAACTGATCTCTTAGAATTCCTGAAAAGGTTCGTGGGTAAACAGAAGAGGAACATAAAATAT
CTGGAATACCAGCATAGCTATCAGAAGGAA
ORF - retro_cfam_1432 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 95.56 % |
| Parental protein coverage: | 52.02 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | RQFIRYLKERKSKVCLPVVKRLDKEYWGTNVQAIVMALELENGLHKLLQDLQNLASQKNETDLLEFLKRF |
| R...RYLKERKSKVCLPVVKRLDKEYW.TNVQAIVMALELENGLHKLLQDLQNLASQKNETDLLEFLKRF | |
| Retrocopy | RIYLRYLKERKSKVCLPVVKRLDKEYWRTNVQAIVMALELENGLHKLLQDLQNLASQKNETDLLEFLKRF |
| Parental | VGKQKRNIKYLEYQHSYQKE |
| VGKQKRNIKYLEYQHSYQKE | |
| Retrocopy | VGKQKRNIKYLEYQHSYQKE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012049_cerebellum | 0 .00 RPM | 0 .00 RPM |
| SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
| SRP017611_kidney | 0 .00 RPM | 0 .07 RPM |
| SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Canis familiaris was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cfam_1432 retrocopy.
Canis familiaris was not studied using FANTOM5 data.
retro_cfam_1432 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cfam_1432 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 3 parental genes, and 11 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000015497 | 1 retrocopy | |
| Canis familiaris | ENSCAFG00000028564 | 9 retrocopies |
retro_cfam_1158, retro_cfam_1163, retro_cfam_1432 , retro_cfam_1901, retro_cfam_365, retro_cfam_448, retro_cfam_567, retro_cfam_715, retro_cfam_746,
|
| Ictidomys tridecemlineatus | ENSSTOG00000022867 | 1 retrocopy |