RetrogeneDB ID: | retro_cfam_1240 | ||
Retrocopy location | Organism: | Dog (Canis familiaris) | |
| Coordinates: | 27:13139350..13139545(-) | ||
| Located in intron of: | ENSCAFG00000028502 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSCAFG00000024961 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_cfam_1240
AAACCATTTTTGGCTTTTGTGGCAGGAACTCCAGAACGTTCCGGGGGCTTCATAGAAATACCTGGTAGTGGGAGCACACG
TGGAAACCCCAGCACGTCAGTTACGACCTTGGGGTTCAGAGGAGGTATGGCTTTCAATGTAGTCAATGTCTTCTTATCAG
GGACCTCTGGGCAGCTGCCAGTGGCTAATGCCATG
ORF - retro_cfam_1240 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 63.08 % |
| Parental protein coverage: | 73.03 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | KPFLAVVAGTPERSGGFIEVPGSGSTLGNPSTAGTTLRFRGGTTLGVRSEPSGTGVGGSPVATTL |
| KPFLA.VAGTPERSGGFIE.PGSGST.GNPST..TTL.FRGG....V.........G..PVA... | |
| Retrocopy | KPFLAFVAGTPERSGGFIEIPGSGSTRGNPSTSVTTLGFRGGMAFNVVNVFLSGTSGQLPVANAM |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012049_cerebellum | 0 .00 RPM | 0 .00 RPM |
| SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
| SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
| SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Canis familiaris was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cfam_1240 retrocopy.
Canis familiaris was not studied using FANTOM5 data.
retro_cfam_1240 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cfam_1240 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Canis familiaris | ENSCAFG00000024961 | 1 retrocopy |
retro_cfam_1240 ,
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