RetrogeneDB ID: | retro_cfam_105 | ||
Retrocopy location | Organism: | Dog (Canis familiaris) | |
| Coordinates: | 12:21224659..21224980(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSCAFG00000030849 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | ENSCAFG00000028898 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_cfam_105
ATGAATACAGCAATTTACAAAAGAGGGGGAAGGGAGGAAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGAACAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGAAAGAAAGAAAGAAAAGAAAGAAAGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAAGAAAGAAA
GAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGATTGGAGTCCAGAGAAATTA
G
ORF - retro_cfam_105 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 77.55 % |
| Parental protein coverage: | 51.6 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | KEERKKERKKKERKKERKKERKKKLKRKKKKERKKERKKERKKERKKERKKKERRKKEKKERKERKREKK |
| K.....ER.KKERKKERKKERKK......KKERKKERKK.RKKERKKERKK...RKKEKKERKERK.E.K | |
| Retrocopy | KRGGREERRKKERKKERKKERKKE-RTERKKERKKERKK-RKKERKKERKKE--RKKEKKERKERKKERK |
| Parental | ERKKERKK-ERKKERKKERKKERKKERK |
| ...KERKK.ERKKERKKERKKERKKERK | |
| Retrocopy | KERKERKKEERKKERKKERKKERKKERK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP012049_cerebellum | 0 .00 RPM | 0 .00 RPM |
| SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
| SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
| SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Canis familiaris was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cfam_105 retrocopy.
Canis familiaris was not studied using FANTOM5 data.
retro_cfam_105 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cfam_105 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Canis familiaris | ENSCAFG00000028898 | 2 retrocopies |
retro_cfam_105 , retro_cfam_109,
|