RetrogeneDB ID: | retro_amel_86 | ||
Retrocopy location | Organism: | Panda (Ailuropoda melanoleuca) | |
| Coordinates: | GL194335.1:72950..75044(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSAMEG00000018636 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MUM1 | ||
| Ensembl ID: | ENSAMEG00000003299 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_amel_86
ATGGATGCTGAATATGTCCTGTGCAATTGGAAAGACCGGTTATGGCCAGCAAAAGTTTTGTCTAGATCTGAGATGTCATC
AGACAGTAAGAGAAAAAAGACATTTTCCCTAGAAGTTCAAATACTCTCACTGGATGAAAAAATTAACGTGGAAAGCACAG
AAACAAAGATTCTAAATAAATCTCAAATTGAAGCCATTGCCTCCTCACTAGCAGCACAGTCAGAAGTCAGTGATCCACCT
AGAAGGGAAACAGCCTATGAAAGGTCACTAAAAGTGGCACTGGATATTCTGAATGAAAGAACAAATTTGAGTCAAGCAAG
CAGTTCAGATGAAGAAGGAACCACTACTCTGTCTCAAGATGATCCACAAAAGCTTTCTGATTCACGCCCTCGTAAAAAGT
ATCGGAAACATGAAGGAGATGAAGGAGACTTATCAAAGTGTCTTGAGGAAAGTGAAAATGCAACATCCCTGTTAGTAGCT
AATTTAGAGAATAATGATTCCCTGTGTGATGATAAATCACAGGTGCGTGCAACCATTGATAGTCTCACAAGTGAAATGGA
AACAAAGTCATCAGAAAACTCCGGCTGGTATGAAACTTTTCCTTCACTTTCAGAAGATGAGGATGAAAAGGAAAGCAAGA
AAAAGATTGATATCTCGGCAGTTATGCCTCTGTATTCCACAATCAAAGAAGAAGATGTATGCGTTAAAGATGAAAAGTTC
ACTCCAACTTGGCCATCAGACACCTTCATTGTGCCCAAAGTTGAGAAAGAGGAGGCAAAAGATATTTGCCCAGAGACTCT
GGCTGTTTCCTCTGAATGCCCTACTTTCTCAGAGAATATTGAAGACCCTGGAGAGGGTCCCTCAAATCCGTGCTCAAGTA
CCAGCCAGAATCAACCTGTGGAATCAGAAGCAGGTGCTGCAGCATCCCCCAGGCGTTGTTCATGGGAATGTCAGGTTTCA
CATAGTGCCTCTAACCGTGTCCTGGATTATTCACTCCTTCTTATGAATAATGAAACAAATCTTCAGAGACTGGATTTTGA
AGAACTTGGGGAAGAACTTCAAGCTTCTGATAAGTCAGCACAGCTAAATCCTATTGATACTTCCATATTAGATGACAACG
AGGAAGATGAAGAACTTCCACGCTTTGTTTTTAATTATGAGCCTCGTTCATTTGAAACAGGAATGATAGTCTGGTTTAAA
TATCAAAAATATCCATTTTGGCCAGCAGTGGTGAAAAGCATCAGGCGAAAAGAGAGAAAGGCAAGTGTGATTTTTGTTGA
GGTAAGCATGAATCCTGAAAAGAGAGGCATTAGGGTGCCTTTTAGAAGATTAAAGAAATTTGATTGTAAAGAGAAACAAG
CACTAGTGGAGAAAGCCAGGGAGGAATACAGTGAAAGTATTGACTGGTGCATCTCACTGATTTGTGACTACAGAGTTAGA
CTAGGTTGTGGTTCTTTTGCAGGCTCTTTCCTTGAGTATTATGCTGCTGATATTAGTTATCCACTTAGGAAAGTAATCAA
ACAGGACACCTTTAGGAACTTATTTCCAAAGCTGCATAATGAGAATTCTGGGGAACAGATGGCTGTGACTTCCCAGACCA
AGAAAATGTCCTTCCAGAAAATTCTTCCTGACCGAATGAAGGCTGCTCGGGACCGAGCCAACAAGAACCTAGTGGACTTC
ATTGTGAATGCAAAGGGGACAGAGAACCATCTTCTAGCCATTTTAAAAGGCACGAAAGGGTCCAGGTGGCTGAAGTCGTT
TTTGAATGCAAATAGGTTCTCTCCCTGTATTGAAACATACTTTGAGGATGAAGATCAGTTGGATGAGGTGGTGAAATATT
TACAAGAAGTCTACAAACAAATAGATGAAAAGATGCTGACTCTGATAAGAGATGATAAAATTAAATTTATCCTGGAAGTT
CTTCTGCCAGAAGCAATCATTTGCTCAATTTCTGCTGTTGATGGATTAGATTACAAGGCAGCTGAAGCAAAGTATCTAAA
GGGACCATCCCTAGGATATAGGGAAAGAGAATTATTTGATGCAAAAATCTTATTTGAAAAGAGACGGAAACCATTAACAA
ATGAAGCTCAATAA
ORF - retro_amel_86 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 53.32 % |
| Parental protein coverage: | 59.29 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | PGRPTCPDARGRPAKRPATQLGPGAAPRQGPGGGMTLRSAAKRSLPAPRASTEETRNLRFL----LEEDR |
| P..P........P....A...G..A.PR..........SA..R.L...........NL..L....L.E.. | |
| Retrocopy | PSNPCSSTSQNQPVESEA---GAAASPRRCSWECQVSHSASNRVLDYSLLLMNNETNLQRLDFEELGEEL |
| Parental | QSSGESVDFNPIRPT-LEEDEDDEEPPRILFYHEPRSFEVGMLVWLKHQKYPFWPAVVKSVRRREKKASV |
| Q.S..S...NPI....L...E.DEE.PR..F..EPRSFE.GM.VW.K.QKYPFWPAVVKS.RR.E.KASV | |
| Retrocopy | QASDKSAQLNPIDTSILDDNEEDEELPRFVFNYEPRSFETGMIVWFKYQKYPFWPAVVKSIRRKERKASV |
| Parental | LFIEGHMDPKGRGITVSLRRLKHFDCKEKQALLNEAKVDFDQAIGWCVSLITDYRVRLGCGSFAGSFLEY |
| .F.E..M.P..RGI.V..RRLK.FDCKEKQAL...A.......I.WC.SLI.DYRVRLGCGSFAGSFLEY | |
| Retrocopy | IFVEVSMNPEKRGIRVPFRRLKKFDCKEKQALVEKAREEYSESIDWCISLICDYRVRLGCGSFAGSFLEY |
| Parental | YAADISYPVRKSIQQDVLGTRFPQLSKGDPEEPVVGSPQGRRRPYRKVLPDRSRAARDRANQKLVEYIVK |
| YAADISYP.RK.I.QD.....FP.L......E......Q.......K.LPDR..AARDRAN..LV..IV. | |
| Retrocopy | YAADISYPLRKVIKQDTFRNLFPKLHNENSGEQMAVTSQTKKMSFQKILPDRMKAARDRANKNLVDFIVN |
| Parental | ARGAEGHLRAILKNRKPSRWLKTFLNSGQYLTCMETYLEDEEQLDLVVKYLQGVYQETGSRTLARINGDR |
| A.G.E.HL.AILK..K.SRWLK.FLN......C.ETY.EDE.QLD.VVKYLQ.VY.......L..I..D. | |
| Retrocopy | AKGTENHLLAILKGTKGSRWLKSFLNANRFSPCIETYFEDEDQLDEVVKYLQEVYKQIDEKMLTLIRDDK |
| Parental | VRFILDVLLPEAIICAIAAVDAVDYKTAEEKYLKGPSLSYREKEIFDNQLLEERSQR |
| ..FIL.VLLPEAIIC.I.AVD..DYK.AE.KYLKGPSL.YRE.E.FD...L.E.... | |
| Retrocopy | IKFILEVLLPEAIICSISAVDGLDYKAAEAKYLKGPSLGYRERELFDAKILFEKRRK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Ailuropoda melanoleuca was not studied using RNA-Seq expression data.
Ailuropoda melanoleuca was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_amel_86 retrocopy.
Ailuropoda melanoleuca was not studied using FANTOM5 data.
retro_amel_86 was not experimentally validated.
Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000003299 | 1 retrocopy |
retro_amel_86 ,
|
| Taeniopygia guttata | ENSTGUG00000000876 | 1 retrocopy |