Parental gene:

YBX1, ENSSTOG00000000116

Aliases:None
Description:Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393284.1:24029438..24047725(+)


>ENSSTOG00000000116
NNTCCCTTCCGCGTGTGCCCAGAGGGCGCGGCGCGCCGCCTACGCAGGCTGGAGTGGGCCGGGCGGCTTCCCCTTCCCTC
ACGTGCTCCCCGCCCGCGGCCTGCGTACACACCCATCTTGGGCCCGCGCCCCAGGCCTGCCCTGCGGCGCCCCACGGCTT
TGAGCCCACCCACGTGTAAGGCAAGGGACGCTAGGGGTCCCCGCGCGGGCCTAAAAGGCTGTCAGGTGCCCGAGAGCTGC
AAGGGGATAGATCCCGAAGCCAGGGCGTTTTACAAGGCTGGCTGGAATGACACCAAGGAAGATGTATTTGTACACCAGAC
TGCCATAAAGAAGAATAACCCCAGGAAGTACCTTCGCAGTGTAGGAGATGGAGAGACTGTGGAGTTTGATGTTGTTGAAG
GAGAAAAGGGTGCGGAGGCAGCAAATGTTACAGGCCCTGGTGGAGTTCCAGTTCAAGGCAGTAAATATGCAGCAGACCGT
AACCATTATAGACGCTATCCACGTCGTAGGGGTCCTCCACGCAATTACCAGCAGAATTATCAGAACAGTGAGAGTGGGGA
AAAGAATGAGGGATCGGAGAGTGCTCCCGAAGGCCAGGCCCAACAACGCCGGCCCTACCGCAGGCGAAGGTTCCCACCTT
ACTACATGCGGAGACCCTATGGGCGTCGACCACAGTATTCCAACCCTCCTGTGCAGGGAGAAGTGATGGAGGGTGCTGAC
AACCAGGGTGCAGGAGAACAAGGTAGACCAGTGAGACAGAATATGTATCGGGGTTATAGACCACGATTCCGCAGGGGCCC
TCCTCGCCAAAGACAGCCTAGAGAGGACGGCAATGAAGAGGATAAGGAAAATCAAGGAGATGAGACCCAAGGTCAGCAGC
CACCTCAACGTCGGTACCGCCGCAACTTCAATTACCGACGCAGACGCCCAGAAAACCCTAAACCACAAGATGGCAAAGAG
ACAAAAGCAGCCGATCCACCAGCTGAGAATTCGTCCGCTCCCGAGGCTGAGCAGGGCGGGGCTGAGTAA

Species Parental gene accession Homology type Retrogenes number
Dipodomys ordii ENSDORG00000016627 ortholog_one2one 1 retrogene
retro_dord_625,
Echinops telfairi ENSETEG00000004125 ortholog_one2one 3 retrogenes
retro_etel_1772, retro_etel_1980, retro_etel_2134,
Loxodonta africana ENSLAFG00000007597 possible_ortholog 1 retrogene
retro_lafr_804,
Macaca mulatta ENSMMUG00000013136 possible_ortholog 5 retrogenes
retro_mmul_1139, retro_mmul_1423, retro_mmul_2017, retro_mmul_423, retro_mmul_861,
Oryctolagus cuniculus ENSOCUG00000028047 possible_ortholog 2 retrogenes
retro_ocun_1519, retro_ocun_1953,
Otolemur garnettii ENSOGAG00000006784 possible_ortholog 25 retrogenes
retro_ogar_1127, retro_ogar_1246, retro_ogar_1350, retro_ogar_1371, retro_ogar_1497, retro_ogar_2011, retro_ogar_2018, retro_ogar_2302, retro_ogar_2359, retro_ogar_2607, retro_ogar_2654, retro_ogar_3170, retro_ogar_3225, retro_ogar_324, retro_ogar_3303, retro_ogar_3316, retro_ogar_3317, retro_ogar_3366, retro_ogar_3416, retro_ogar_3474, retro_ogar_448, retro_ogar_572, retro_ogar_678, retro_ogar_690, retro_ogar_753,
Ochotona princeps ENSOPRG00000008050 ortholog_one2one 11 retrogenes
retro_opri_1097, retro_opri_1114, retro_opri_115, retro_opri_1196, retro_opri_340, retro_opri_367, retro_opri_626, retro_opri_781, retro_opri_896, retro_opri_910, retro_opri_984,
Sorex araneus ENSSARG00000007896 possible_ortholog 1 retrogene
retro_sara_559,
Sus scrofa ENSSSCG00000028485 ortholog_one2one 3 retrogenes
retro_sscr_1157, retro_sscr_255, retro_sscr_256,
Ictidomys tridecemlineatus ENSSTOG00000002108 within_species_paralog 1 retrogene
retro_itri_1884,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_1532 91.67 69.88
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Download FASTA sequences of all ENSSTOG00000000116 retrocopies