Parental gene:

YBX1, ENSOPRG00000008050

Aliases:None
Description:Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]
Organism:Southern American pika (Ochotona princeps)
Coordinates:GeneScaffold_5413:41957..83663(+)


>ENSOPRG00000008050
ACGAAGGTTTTGGGAACAGTAAAATGGTTCAATGTAAGGAACGGATACGGCTTCATCAACAGGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNACTGCCATAAAGAAGAATAACCCCAGGAAGTACCTTCGCAGTGTAGGAGATGGAGAGACTGTGG
AGTTTGATGTTGTTGAAGGAGAAAAGGGTGCGGAGGCAGCAAACGTTACAGGCCCTGGTGGAGTTCCAGTACAAGGCAGT
AAATATGCAGCAGACCGTAACCATTATAGACGCTATCCACGTCGTAGGGGTCCTCCGCGCAATTACCAGCAGAATTACCA
GAATAGTGAGAGTGGGGAAAAGAACGAGGGATCGGAGAGTGCTCCCGAAGGCCAGGCCCAACAACGCCGGCCCTACCGCA
GGCGAAGGTTCCCACCTTACTACATGCGGAGACCCTATGGGCGTCGACCACAGTATTCCAACCCTCCTGTGCAGGGAGAA
GTGATGGAAGGTGCTGACAACCAGGGTGCAGGAGAACAAGGTAGACCTGTGAGACAGAACATGTATCGAGGTTATAGACC
ACGATTCCGCAGAGGTCCTCCTCGCCAAAGACAGCCTAGAGAGGACGGCAATGAAGAGGATAAGGAGAATCAAGGAGACG
AGACCCAAGGTCAGCAGCCACCTCAACGTCGGTACCGCCGGAACTTCAATTACCGACGCAGACGCCCAGATAACCCTAAA
CCACAAGATGGCAAAGAGACAAAAGCAGCCGATCCACCAGCTGAGAATTCGTCCGCTCCCGAGGCTGAGCAGGGCGGGGC
TGAGAAA

Species Parental gene accession Homology type Retrogenes number
Dipodomys ordii ENSDORG00000016627 ortholog_one2one 1 retrogene
retro_dord_625,
Echinops telfairi ENSETEG00000004125 ortholog_one2one 3 retrogenes
retro_etel_1772, retro_etel_1980, retro_etel_2134,
Loxodonta africana ENSLAFG00000007597 possible_ortholog 1 retrogene
retro_lafr_804,
Macaca mulatta ENSMMUG00000013136 possible_ortholog 5 retrogenes
retro_mmul_1139, retro_mmul_1423, retro_mmul_2017, retro_mmul_423, retro_mmul_861,
Mustela putorius furo ENSMPUG00000013922 ortholog_one2one 6 retrogenes
retro_mputfur_1154, retro_mputfur_1332, retro_mputfur_1436, retro_mputfur_1627, retro_mputfur_215, retro_mputfur_293,
Oryctolagus cuniculus ENSOCUG00000028047 ortholog_one2many 2 retrogenes
retro_ocun_1519, retro_ocun_1953,
Otolemur garnettii ENSOGAG00000006784 possible_ortholog 25 retrogenes
retro_ogar_1127, retro_ogar_1246, retro_ogar_1350, retro_ogar_1371, retro_ogar_1497, retro_ogar_2011, retro_ogar_2018, retro_ogar_2302, retro_ogar_2359, retro_ogar_2607, retro_ogar_2654, retro_ogar_3170, retro_ogar_3225, retro_ogar_324, retro_ogar_3303, retro_ogar_3316, retro_ogar_3317, retro_ogar_3366, retro_ogar_3416, retro_ogar_3474, retro_ogar_448, retro_ogar_572, retro_ogar_678, retro_ogar_690, retro_ogar_753,
Ochotona princeps ENSOPRG00000013773 within_species_paralog 5 retrogenes
retro_opri_326, retro_opri_327, retro_opri_534, retro_opri_760, retro_opri_824,
Sorex araneus ENSSARG00000007896 possible_ortholog 1 retrogene
retro_sara_559,
Sus scrofa ENSSSCG00000028485 ortholog_one2one 3 retrogenes
retro_sscr_1157, retro_sscr_255, retro_sscr_256,
Ictidomys tridecemlineatus ENSSTOG00000000116 ortholog_one2one 1 retrogene
retro_itri_1532,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opri_115 76.47 56.13
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_opri_340 77.08 50.93
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_opri_367 80.67 55.39
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_opri_626 76.47 56.13
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_opri_781 65.36 55.76
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_opri_896 53.47 53.16
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_opri_910 52.86 50.56
Please wait, loading
Please wait, loading
Please wait, loading
8. retro_opri_984 77.08 50.93
Please wait, loading
Please wait, loading
Please wait, loading
9. retro_opri_1097 81.33 88.85
Please wait, loading
Please wait, loading
Please wait, loading
10. retro_opri_1114 81.60 59.48
Please wait, loading
Please wait, loading
Please wait, loading
11. retro_opri_1196 63.58 63.20
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSOPRG00000008050 retrocopies