Parental gene:

Tpm2, ENSRNOG00000016731

Aliases:None
Description:Tropomyosin beta chain [Source:UniProtKB/Swiss-Prot;Acc:P58775]
Organism:Rat (Rattus norvegicus)
Coordinates:5:63541286..63550225(-)


>ENSRNOG00000016731
ATGGACGCCATCAAGAAGAAGATGCAGATGCTGAAACTGGACAAGGAGAATGCCATCGACCGCGCAGAGCAGGCCGAAGC
CGACAAGAAGCAAGCTGAAGACCGATGCAAGCAGCTGGAGGAAGAGCAGCAGGCCCTCCAGAAGAAACTGAAGGGGACAG
AGGATGAGGTGGAAAAGTATTCCGAGTCTGTGAAGGATGCCCAGGAGAAACTGGAGCAGGCCGAGAAGAAGGCCACCGAT
GCTGAAGCAGATGTGGCTTCTCTGAATCGACGCATTCAGCTCGTAGAGGAGGAGTTGGATCGGGCACAGGAGCGCCTGGC
TACAGCCTTGCAAAAGCTGGAGGAGGCTGAGAAAGCCGCTGATGAGAGCGAGAGAGGAATGAAGGTCATTGAGAACCGGG
CCATGAAGGATGAGGAGAAGATGGAGCTGCAGGAGATGCAGCTGAAAGAAGCCAAGCACATCGCTGAGGACTCAGACCGC
AAATACGAGGAGGTGGCCAGGAAGCTGGTGATCCTGGAAGGAGAGCTGGAGCGCTCTGAAGAGAGAGCCGAGGTGGCTGA
GAGCCGAGCCAGGCAGCTGGAGGAGGAGCTTCGAACCATGGACCAGGCTCTCAAGTCGCTGATAGCCTCAGAGGAGGAGT
ATTCCACCAAAGAGGACAAATACGAAGAAGAGATCAAACTTCTGGAGGAGAAGCTGAAGGAGGCTGAGACCCGAGCAGAG
TTTGCTGAAAGATCTGTGGCAAAGTTGGAGAAAACCATCGATGACCTGGAAGAGACTTTGGCTAGTGCCAAGGAAGAGAA
CGTGGAGATTCACCAGACCTTGGACCAGACCCTTCTGGAACTCAACAACCTGTAA

Library Parental gene expression (RPM)
SRP017611_brain 10 .86 RPM
SRP017611_kidney 14 .86 RPM
SRP017611_liver 3 .09 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009627 possible_ortholog 2 retrogenes
retro_cjac_1839, retro_cjac_1894,
Otolemur garnettii ENSOGAG00000011793 ortholog_one2one 1 retrogene
retro_ogar_988,
Rattus norvegicus ENSRNOG00000017441 within_species_paralog 1 retrogene
retro_rnor_1524,
Rattus norvegicus ENSRNOG00000018184 within_species_paralog 1 retrogene
retro_rnor_734,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1520 83.64 92.25
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Download FASTA sequences of all ENSRNOG00000016731 retrocopies