Parental gene:

Pwp1, ENSRNOG00000005350

Aliases:Pwp1, RGD1310705
Description:periodic tryptophan protein 1 homolog [Source:RefSeq peptide;Acc:NP_001178806]
Organism:Rat (Rattus norvegicus)
Coordinates:7:24138855..24154854(-)


>ENSRNOG00000005350
ATGAACCGCAGCCGCCAAGTGACCTGCGTGGCCTGGGTCCGCCGCGGCGTGGCCAAAGAGACGCCAGACAAGGTAGAGCT
AAGTAAAGAGGAAGTGAAACGTCTCATTGCTGAAGCAAAAGAAAAGTTACAAGAGGAGGGTGGGAGTGAGGAAGAGGAGG
TAGGCAGTCCTTCAGAAGATGGCATGCAGAGAGCCCGGGTCCAGGCCCGGCCTACGGAGCCGCTGGAGGATGGGGATCCA
CAAGACGACCGTACACTGGACGACGATGAGCTGGCGGAGTACGACTTAGATAACTATGACCAAGAGGACAACCCAGATGC
TGAGACCATTGGAGAATCTCTGTTGGGGCTTACGGTCTATGGCAGTAACGATCAGGATCCATACGTCACCCTCAAAGACA
CGGAACAGTACGAGCACGAAGACTTCTTGATTAAGCCGACCGACAACCTCATCGTCTGTGGCCGTGCAGAACAAGAGCAG
TGTAACTTAGAGGTGCACGTGTACAATCAAGAAGAGGAGTCTTTCTATGTCCACCATGACATACTCCTGTCTGCATATCC
TCTAAGTGTGGAATGGCTGAATTTTGATCCTAGCCCAGATGCGGCTACTGGAAATTACATTGCTGTGGGAAACATGACCC
CTGTCATTGAGGTGTGGGACCTGGATATCGTGGACTCTCTAGAACCAGTCTTCACACTGGGAAGCAAGCTTTCAAAAAAG
AAGAAGAAGAAAGGGAAAAAGAGTTCGTCAGCAGAAGGACATACTGATGCTGTCCTTGACCTTTCCTGGAATAAGACAGT
CAGAAACGTGCTGGCGAGTGCATCAGCAGACAGCACTGTAATCCTGTGGGATCTGTCTGTGGGGAAGCCAGCGGCCAGGC
TTACTGCACATACAGACAAGGTTCAGACTCTGCAGTTTCATCCATTTGAAGCACAGACTCTGATTTCTGGGTCCTATGAC
AAATCCGTGGCTCTGTACGACTGCAGAGACCCCAGCCAGAACCACCGTCTGTGGAGGTTTAGTGGGCAGATCGAGAGAGT
GACCTGGAACCACTTCTCACCGTGCCATTTCTTGGCCAGTACAGATGATGGCTTTGTATATAATCTGGATGCGCGCTCAG
ATAAGCCGATTTTTACACTTAATGCACACAACGATGAAATCTCTGGTCTTGATCTGAGCAGTCAGATCAAAGGCTGCCTT
GTGACCGCTTCAGCAGACAAATTTGTGAAGATCTGGGACATCTTAGGAGAGAGGCCAAGTCTCATTCATTCTAGAGACAT
GAAGATGGGAGTTCTCTTTTGTTCTTCATGCTGCCCTGATTTGCCGTTTGTTTACGCCTTTGGAGGACAGAAAGAAGGGC
TTCGGGTTTGGGACATAAGCACTGTGTCTTCAGTAAACGAAGCGTTTGGAAGACGGGAGAGACTGGCCATTGGCAGCACA
AAAGGTTTATCTGTTAGTGACCCCTGTAGGAGCGGGAGCCCACAGACACCAATGGAGTCCTGA

Library Parental gene expression (RPM)
SRP017611_brain 11 .93 RPM
SRP017611_kidney 17 .17 RPM
SRP017611_liver 8 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Macaca mulatta ENSMMUG00000015544 ortholog_one2many 1 retrogene
retro_mmul_688,
Macaca mulatta ENSMMUG00000031574 ortholog_one2many 1 retrogene
retro_mmul_687,
Mus musculus ENSMUSG00000001785 ortholog_one2one 2 retrogenes
retro_mmus_1600, retro_mmus_3074,
Otolemur garnettii ENSOGAG00000011940 ortholog_one2one 2 retrogenes
retro_ogar_2999, retro_ogar_3444,
Tursiops truncatus ENSTTRG00000011036 ortholog_one2one 1 retrogene
retro_ttru_540,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_646 78.95 56.60
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Download FASTA sequences of all ENSRNOG00000005350 retrocopies