Parental gene:

Tuba4a, ENSRNOG00000003597

Aliases:Tuba4a, Tuba4
Description:Tubulin alpha-4A chain [Source:UniProtKB/Swiss-Prot;Acc:Q5XIF6]
Organism:Rat (Rattus norvegicus)
Coordinates:9:82184865..82188549(-)


>ENSRNOG00000003597
ATGCGTGAGTGCATTTCAGTCCATGTGGGCCAGGCAGGTGTCCAGATGGGCAATGCCTGCTGGGAGCTCTACTGCCTGGA
ACATGGGATTCAGCCTGATGGGCAGATGCCTAGCGATAAGACCATTGGTGGAGGGGATGACTCCTTCACCACCTTCTTCT
GTGAAACTGGAGCTGGAAAACATGTGCCTCGGGCAGTCTTTGTGGATCTGGAGCCTACTGTAATTGATGAGATCCGAAAT
GGCCCGTACCGCCAGCTCTTCCACCCAGAACAGCTTATCACTGGGAAGGAAGATGCAGCCAACAACTATGCCCGTGGTCA
CTACACCATTGGCAAGGAGATCATCGACCCAGTGCTGGACCGGATCCGCAAGCTGTCTGATCAGTGTACAGGACTCCAGG
GCTTTCTGGTGTTCCACAGCTTTGGAGGAGGCACTGGCTCTGGCTTCACCTCTCTGCTGATGGAACGGCTTTCTGTTGAC
TATGGCAAGAAGTCCAAGCTGGAGTTCTCCATCTACCCAGCCCCACAAGTGTCCACGGCTGTAGTGGAGCCCTATAACTC
CATCCTGACCACCCATACCACCCTGGAACACTCGGACTGTGCCTTCATGGTGGACAACGAGGCCATTTATGACATCTGTC
GCCGTAACCTGGATATTGAGCGCCCAACCTATACCAACCTCAACCGCCTCATCAGCCAAATTGTCTCCTCCATCACAGCT
TCCTTGCGCTTTGATGGGGCCCTCAATGTGGACCTGACAGAGTTCCAGACCAACCTGGTACCCTACCCTCGCATCCACTT
CCCCTTGGCTACCTACGCACCAGTCATTTCTGCAGAGAAGGCCTACCATGAGCAGCTGTCAGTGGCAGAGATCACCAATG
CCTGTTTTGAGCCTGCCAACCAGATGGTGAAATGTGACCCTCGGCATGGCAAGTACATGGCCTGCTGCCTGCTGTACCGG
GGAGATGTGGTGCCCAAGGATGTGAACGCTGCCATCGCTGCCATCAAGACGAAGCGCAGCATCCAGTTTGTGGACTGGTG
CCCCACAGGCTTCAAGGTCGGTATCAACTACCAGCCTCCCACCGTGGTGCCTGGGGGCGACCTGGCCAAGGTGCAGCGTG
CAGTGTGCATGCTGAGCAACACAACCGCCATTGCTGAAGCCTGGGCCCGCCTGGACCACAAGTTTGACTTGATGTATGCC
AAGAGGGCTTTTGTACACTGGTATGTGGGTGAGGGAATGGAGGAGGGGGAGTTCTCCGAGGCTCGAGAGGATATGGCTGC
CCTGGAGAAAGATTATGAGGAAGTAGGCATCGACTCCTATGAGGACGAGGATGAGGGAGAAGAATAG

Library Parental gene expression (RPM)
SRP017611_brain 410 .53 RPM
SRP017611_kidney 109 .98 RPM
SRP017611_liver 64 .75 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000008444 possible_ortholog 2 retrogenes
retro_chof_179, retro_chof_360,
Dipodomys ordii ENSDORG00000000154 ortholog_one2one 3 retrogenes
retro_dord_460, retro_dord_564, retro_dord_786,
Echinops telfairi ENSETEG00000010296 ortholog_one2one 2 retrogenes
retro_etel_1816, retro_etel_1993,
Felis catus ENSFCAG00000027277 ortholog_one2one 1 retrogene
retro_fcat_596,
Felis catus ENSFCAG00000028689 possible_ortholog 3 retrogenes
retro_fcat_1802, retro_fcat_254, retro_fcat_798,
Macropus eugenii ENSMEUG00000010779 possible_ortholog 2 retrogenes
retro_meug_1648, retro_meug_2174,
Microcebus murinus ENSMICG00000000804 ortholog_one2one 1 retrogene
retro_mmur_103,
Otolemur garnettii ENSOGAG00000009435 possible_ortholog 1 retrogene
retro_ogar_240,
Pteropus vampyrus ENSPVAG00000010798 ortholog_one2one 1 retrogene
retro_pvam_1019,
Rattus norvegicus ENSRNOG00000004559 within_species_paralog 3 retrogenes
retro_rnor_1200, retro_rnor_2006, retro_rnor_446,
Rattus norvegicus ENSRNOG00000015544 within_species_paralog 3 retrogenes
retro_rnor_1193, retro_rnor_2260, retro_rnor_960,
Ictidomys tridecemlineatus ENSSTOG00000019497 ortholog_one2one 1 retrogene
retro_itri_203,
Tursiops truncatus ENSTTRG00000010042 ortholog_one2one 1 retrogene
retro_ttru_531,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_2819 58.60 68.53
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Download FASTA sequences of all ENSRNOG00000003597 retrocopies