Parental gene:

HTATIP2, ENSPPYG00000003421

Aliases:None
Description:HIV-1 Tat interactive protein 2, 30kDa [Source:HGNC Symbol;Acc:16637]
Organism:Orangutan (Pongo abelii)
Coordinates:11:49680710..49700365(-)


>ENSPPYG00000003421
ATGGCCGAAACAGAAGCACTGTCGAAGCTTCGGGAAGACTTCAGGATGCAGAATAAATCCGTCTTTATTTTGGGCGCCAG
CGGAGAAACCGGCAGAGTGCTCTTAAAGGAAATCCTGGAGCAGGGCCTGTTTTCCAAAGTCACGCTCATTGGCCGGAGGA
AGCTCACCTTCGACGAGGAAGCTTATAAAAATGTGAATCAAGAAGTGGTGGACAGATTTGAAAAGTTGGATGACTACGCT
TCTGCCTTTCAAGGTCATGATGTTGGATTCTGTTGCCTGGGTACCACCAGAGTGAAAGCTGGGGCGGAGGGATTTGTTCG
TGTTGACCGAGATTATGTGCTGAAGTCTGCAGAGCTGGCAAAAGCTGGAGGGTGCAAACATTTCAACTTGCTATCCTCTA
AAGGAGCTGATAAATCAAGCAATTTTTTATATCTACAAGTTAAGGGAGAAGTAGAAGCCAAGGTTGAAGAATTAAAATTT
GATCGTTACTCTGTATTTAGGCCTGGAGTTCTGTTATGTGATAGGCAAGAATCTCGCCCAGGTGAATGGCTGGTTAGAAA
GTTCTTTGGCTCCTTACCAGAGTCTTGGGCCAGTGGGTATTCTGTACCTGTGGTGACTGTGGTTAGAGCAATGCTGAACA
ATATGGTGAGACCAAGAGACAAGCAGATGGAACTGCTGGAGAACAAGGCCATCCATGACCTGGGGAAAGTGCATGGCTCT
CTCAAGCCATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 1 .77 RPM
SRP007412_cerebellum 2 .07 RPM
SRP007412_heart 0 .84 RPM
SRP007412_kidney 3 .35 RPM
SRP007412_liver 3 .79 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000006718 ortholog_one2one 1 retrogene
retro_cjac_967,
Loxodonta africana ENSLAFG00000018703 ortholog_one2one 1 retrogene
retro_lafr_244,
Oryctolagus cuniculus ENSOCUG00000000749 ortholog_one2one 1 retrogene
retro_ocun_822,
Ictidomys tridecemlineatus ENSSTOG00000011216 ortholog_one2one 2 retrogenes
retro_itri_1354, retro_itri_1523,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1288 93.88 100.00
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Download FASTA sequences of all ENSPPYG00000003421 retrocopies