Parental gene:

PCMT1, ENSOCUG00000000499

Aliases:None
Description:protein-L-isoaspartate (D-aspartate) O-methyltransferase [Source:HGNC Symbol;Acc:8728]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:GL018800:104792..155894(-)


>ENSOCUG00000000499
ATGCCGGGAGCGCGCAGTGGCGGCAGCGGCAGCGGCGGCGACGGCAGTAGCAGCGGCGGCGACAGCGGGGACGCGAGCGG
GGCGGTGACCGTGTGGGAGGTGGTCTCACTCTTAGCGAAACTGTTGGGAACCGTCGCCGCGCTGAAGGTGGTTCTGTACC
TGCTCCGAGTGTGCTTAGCGATGGCCTGGAAATCCGGCGGCGCCAGCCACTCGGAGCTAATCCACAATCTCCGCAAAAAT
GGTATCATAAAGACAGATAAAGTGTTTGAAGTTATGCTGGCTACGGATCGCTCCCACTATGCCAAATGTAACCCTTATAT
GGATTCTCCACAATCAATAGGTTTCCAAGCAACAATCAGTGCTCCACACATGCATGCATATGCACTAGAACTTCTATTTG
ATCAGTTACATGAAGGAGCTAAAGCTCTTGATGTAGGATCCGGAAGTGGAATCCTTACTGCATGTTTTGCACGTATGGTG
GGATGTAGTGGAAAAGTCATAGGAATTGATCACATTAAAGAGCTAGTAGATGACTCAATAAACAACGTCAGAAAGGATGA
CCCAACACTTTTGTCTTCAGGGAGAGTGCAACTGGTTGTGGGGGACGGGCGAATGGGCTATGCTGAAGAAGCCCCGTATG
ATGCTATTCATGTCGGAGCTGCAGCCCCAGTGGTGCCCCAGGCACTAATAGACCAGCTAAAGCCTGGTGGAAGATTGATA
TTGCCAGTTGGTCCTGCGGGTGGAAACCAAATGTTGGAGCAGTATGATAAGCTACAAGATGGCAGCGTCAAAATGAAGCC
TTTGATGGGGGTGATATATGTGCCTTTAACAGATAAAGAAAAGCAATGGTCTAGGGATGAACTCTAA

Library Parental gene expression (RPM)
SRP017611_brain 174 .17 RPM
SRP017611_kidney 39 .22 RPM
SRP017611_liver 19 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009230 ortholog_one2many 1 retrogene
retro_cjac_75,
Macaca mulatta ENSMMUG00000029462 ortholog_one2many 1 retrogene
retro_mmul_134,
Ochotona princeps ENSOPRG00000002833 ortholog_one2one 2 retrogenes
retro_opri_171, retro_opri_434,
Tupaia belangeri ENSTBEG00000000451 ortholog_one2one 1 retrogene
retro_tbel_883,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_871 86.89 71.53
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2. retro_ocun_955 72.35 73.61
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Download FASTA sequences of all ENSOCUG00000000499 retrocopies