Parental gene:

TPM3, ENSNLEG00000010990

Aliases:None
Description:tropomyosin 3 [Source:HGNC Symbol;Acc:12012]
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397275.1:4892300..4922330(-)


>ENSNLEG00000010990
ATGGCTGGGATCACCACCATCGAGGCGGTGAAGCGGAAGATCCAGGTTCTGCAGCAGCAGGCAGATGATGCAGAGGAGCG
AGCTGAGCGCCTCCAGCGAGAAGTTGAGGGAGAAAGGCGGGCCCGGGAACAGGCTGAGGCTGAGGTGGCCTCCTTGAACC
GTAGGATCCAGCTGGTTGAAGAAGAGCTGGACCGTGCTCAGGAGCGCCTGGCCACTGCCCTGCAAAAGCTGGAAGAAGCG
GAAAAAGCTGCTGATGAGAGTGAGAGAGGTATGAAGGTTATTGAAAACCGGGCCTTAAAAGATGAAGAAAAGATGGAACT
CCAAGAAATCCAACTCAAAGAAGCTAAGCACATTGCAGAAGAGGCAGATAGGAAGTATGAAGAGGTGGCTCGTAAGTTGG
TGATTATTGAAGGAGACCTGGAACGCACAGAGGAACGAGCTGAGCTGGCAGAGTCCCGTTGCCGAGAGATGGATGAGCAG
ATTAGACTGATGGACCAGAACCTGAAGTGTCTGAGTGCTGCTGAAGAAAAGTACTCTCAAAAAGAAGACAAATATGAGGA
AGAAATCAAGATTCTTACTGATAAACTCAAGGAGGCAGAGACCCGTGCTGAGTTTGCTGAGAGATCGGTAGCCAAGCTGG
AAAAGACAATTGATGATTTGGAAGATGAGCTCTATGCCCAGAAACTGAAGTACAAGGCCATTAGCGAGGAGCTGGACCAC
GCCCTCAATGACATGACCTCTATATAA

Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000009747 possible_ortholog 9 retrogenes
retro_cjac_1232, retro_cjac_1509, retro_cjac_1580, retro_cjac_1910, retro_cjac_2476, retro_cjac_3121, retro_cjac_527, retro_cjac_785, retro_cjac_798,
Gorilla gorilla ENSGGOG00000012668 possible_ortholog 3 retrogenes
retro_ggor_1239, retro_ggor_1817, retro_ggor_2621,
Nomascus leucogenys ENSNLEG00000005413 within_species_paralog 2 retrogenes
retro_nleu_1952, retro_nleu_469,
Otolemur garnettii ENSOGAG00000025133 possible_ortholog 1 retrogene
retro_ogar_62,
Pongo abelii ENSPPYG00000000787 possible_ortholog 2 retrogenes
retro_pabe_1230, retro_pabe_3263,
Rattus norvegicus ENSRNOG00000017441 possible_ortholog 1 retrogene
retro_rnor_1524,
Sus scrofa ENSSSCG00000006556 possible_ortholog 3 retrogenes
retro_sscr_318, retro_sscr_604, retro_sscr_781,
Ictidomys tridecemlineatus ENSSTOG00000023525 possible_ortholog 6 retrogenes
retro_itri_1453, retro_itri_1558, retro_itri_1837, retro_itri_231, retro_itri_674, retro_itri_709,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_nleu_921 78.00 100.00
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2. retro_nleu_922 77.51 100.00
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3. retro_nleu_1133 84.65 91.94
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4. retro_nleu_2050 69.63 54.44
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5. retro_nleu_2119 76.03 58.06
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6. retro_nleu_2141 75.40 50.81
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7. retro_nleu_2387 92.73 66.53
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8. retro_nleu_2523 73.19 55.65
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Download FASTA sequences of all ENSNLEG00000010990 retrocopies