Parental gene: | Ss18, ENSMUSG00000037013 |
| Aliases: | Ss18, D130059H17, Ssxt, Syt |
| Description: | synovial sarcoma translocation, Chromosome 18 [Source:MGI Symbol;Acc:MGI:107708] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 18:14624197..14682914(-) |
>ENSMUSG00000037013
ATGTCTGTGGCGTTCGCAGCCCCGAGGCAGCGGGGCAAGGGCGAAATCACGCCCGCCGCCATCCAGAAGATGCTGGATGA
AAACAACCATCTTATTCAGTGTATAATGGACTATCAGAACAAAGGGAAGGCCTCGGAGTGCTCGCAGTATCAGCAGATAT
TGCATACAAACCTGGTATACCTTGCTACAATAGCAGACTCTAATCAAAATATGCAGTCTCTCTTACCAGCACCGCCCACA
CAGACTATGCCAATGGGTCCTGGAGGGATGAGTCAGAGTGGCCCTCCACCCCCTCCCCGCTCTCACAACATGCCTTCAGA
TGGAATGGTGGGTGGGGGCCCTCCTGCACCACACATGCAGAACCAGATGAACGGCCAGATGCCTGGGCCTAACCATATGC
CAATGCAGGGACCTGGACCCAGTCAGCTCAGCATGACAAACAGCTCCATGAATATGCCTTCAAGTAGCCATGGCTCCATG
GGAGGTTACAACCATTCTGTGCCGTCATCCCAGAGCATGCCCGTGCAGAACCAGATGACAATGAGTCAGGGGCAGCCAAT
GGGAAACTATGGTCCCAGACCAAACATGAATATGCAACCAAATCAAGGGCCGATGATGCACCAGCAGCCTCCTTCTCAGC
AGTACAATATGCCACCTGGAGGGGCACAGCATTACCAAGGACAGCAGGCGCCCATGGGGCTGATGGGCCAAGTTAACCAA
GGCAGTCACATGATGGGCCAGCGACAGATGCCTCCCTACAGACCTCCGCAACAGGGCCCACCACAGCAGTACTCAGGCCA
GGAAGACTATTATGGGGACCAATACAGTCATGGTGGACAAGGTCCTCCAGAAGGCATGAACCAGCAATATTACCCTGATG
GTCATAATGATTACGGTTATCAGCAACCGTCGTATCCTGAACAAGGCTACGATAGGCCTTATGAGGATTCCTCACAACAT
TACTACGAAGGAGGAAACTCCCAGTATGGCCAACAGCAAGACGCTTACCAGGGACCACCTCCACAGCAAGGATACCCACC
CCAGCAGCAGCAGTACCCGGGACAGCAGGGATACCCAGGGCAGCAGCAGAGCTATGGTCCTTCGCAGGGCGGTCCAGGTC
CTCAGTATCCTAATTATCCTCAGGGTCAAGGTCAGCAGTATGGGGGCTATAGACCAACACAGCCAGGACCACCCCAGCCA
CCCCAGCAGAGGCCTTATGGGTACGACCAGGGACAGTATGGAAATTACCAGCAGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 23 .43 RPM |
| SRP007412_cerebellum | 38 .91 RPM |
| SRP007412_heart | 33 .62 RPM |
| SRP007412_kidney | 42 .48 RPM |
| SRP007412_liver | 28 .84 RPM |
| SRP007412_testis | 42 .40 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Mus musculus | ENSMUSG00000032526 | within_species_paralog | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000015699 | ortholog_one2one | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000007668 | possible_ortholog | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_1951 | 95.83 | 98.97 | Please wait, loading  |
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Download FASTA sequences of all ENSMUSG00000037013 retrocopies