Parental gene:

FAM20B, ENSMMUG00000006260

Aliases:None
Description:glycosaminoglycan xylosylkinase [Source:RefSeq peptide;Acc:NP_001247688]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:1:191666742..191695280(-)


>ENSMMUG00000006260
ATGAAGCTAAAGCAGCGAGTCGTGCTGTTAGCAATTCTCCTTGTCATTTTTATCTTCACCAAAGTTTTCCTGATTGACAA
CTTAGATACATCAGCTGCCAACCGGGAGGACCAGAGGGCCTTTCACCGAATGATGACTGGCTTGCGGGTGGAGCTGGCGC
CCAAGCTGGACCATACCTTGCAGTCTCCCTGGGAGATTGCAGCCCAGTGGGTGGTTCCCCGGGAAGTGTACCCTGAAGAG
ACACCAGAGCTGGGGGCAATCATGCATGCCATGGCCACCAAGAAAATCATTAAAGCTGATGTGGGTTATAAAGGGACACA
GCTGAAAGCCTTACTGATACTTGAAGGAGGACAGAAAGTTGTTTTCAAACCTAAGCGGTATAGCCGAGACTATGTGGTGG
AAGGGGAACCATATGCCGGTTATGATAGACACAATGCAGAGGTAGCAGCCTTTCACTTGGACAGGATTCTGGGTTTCCGC
CGAGCCCCCTTGGTGGTTGGCAGATTTGTTAATCTTCGGACAGAGATTAAACCTGTTGCCACGGAGCAGCTGTTGAGCAC
CTTCCTAACTGTAGGAAACAATACTTGTTTTTATGGGAAGTGCTATTACTGCCGAGAAACAGAACCAGCTTGTGCTGATG
GAGACACAATGGAGGGATCTGTCACACTTTGGCTTCCAGATGTGTGGCCTCTGCAGAAACACCGTCACCCATGGGGCAGG
ACTTACCGAGAAGGCAAATTGGCCAGGTGGGAGTATGACGAGAGCTACTGTGATGCTGTGAAGAAAACATCCCCTTATGA
CTCTGGCCCGCGCCTCTTGGACATCATTGACACAGCTGTCTTTGATTACCTGATTGGCAATGCTGACCGCCATCACTATG
AGAGCTTTCAAGATGATGAAGGCGCTAGTATGCTCATCCTTCTTGATAATGCCAAAAGCTTTGGGAACCCCTCGCTGGAT
GAAAGAAGCATTCTTGCCCCTCTCTATCAGTGTTGCATCATTCGGGTTTCTACCTGGAACAGACTGAACTACCTAAAGAA
TGGTGTGCTAAAGTCTGCCTTAAAATCTGCCATGGCCCATGACCCCATCTCCCCAGTGCTCTCTGATCCTCATCTGGACG
CCGTGGATCAGCGGCTCCTGAGTGTCCTGGCCACTGTGAAGCAGTGTACCGACCAGTTTGGGGTGGACACAGTACTGGTG
GAAGACAGGATGCCTCTCTCACACTTGTAA

Library Parental gene expression (RPM)
SRP007412_brain 26 .56 RPM
SRP007412_brain_prefrontal_cortex 35 .06 RPM
SRP007412_cerebellum 22 .86 RPM
SRP007412_heart 15 .02 RPM
SRP007412_kidney 30 .40 RPM
SRP007412_liver 7 .92 RPM
SRP007412_testis 10 .29 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000005236 ortholog_one2one 6 retrogenes
retro_chof_1509, retro_chof_1926, retro_chof_2615, retro_chof_2629, retro_chof_799, retro_chof_868,
Dasypus novemcinctus ENSDNOG00000006175 ortholog_one2one 2 retrogenes
retro_dnov_1484, retro_dnov_2346,
Echinops telfairi ENSETEG00000005651 ortholog_one2one 1 retrogene
retro_etel_1128,
Homo sapiens ENSG00000116199 ortholog_one2one 1 retrogene
retro_hsap_2730,
Gorilla gorilla ENSGGOG00000002484 ortholog_one2one 1 retrogene
retro_ggor_1899,
Macropus eugenii ENSMEUG00000006654 ortholog_one2one 1 retrogene
retro_meug_414,
Nomascus leucogenys ENSNLEG00000015580 ortholog_one2one 1 retrogene
retro_nleu_592,
Otolemur garnettii ENSOGAG00000012751 ortholog_one2one 1 retrogene
retro_ogar_2800,
Pongo abelii ENSPPYG00000000466 ortholog_one2one 2 retrogenes
retro_pabe_2268, retro_pabe_2269,
Pan troglodytes ENSPTRG00000001725 ortholog_one2one 1 retrogene
retro_ptro_1845,
Ictidomys tridecemlineatus ENSSTOG00000005086 ortholog_one2one 2 retrogenes
retro_itri_441, retro_itri_539,
Tarsius syrichta ENSTSYG00000005482 ortholog_one2one 3 retrogenes
retro_tsyr_2065, retro_tsyr_2124, retro_tsyr_89,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1533 73.33 54.28
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Download FASTA sequences of all ENSMMUG00000006260 retrocopies