Parental gene:

ENSEEUG00000010991

Aliases:None
Description:None
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:scaffold_353867:4039..7819(+)


>ENSEEUG00000010991
TGCAAAATTCAAAATGGGGCCCAAGGTATTCGGTTCATCTACACCAGAGAAGGCAGACCGAGTGGCGAGGCTTTTGTTGA
ACTTGAATCAGAAGATGAAGTCAAATTGGCCCTGAAAAAAGACAGAGAAACTATGGGACACAGATATGTTGAAGTATTCA
AGTCAAACAACGTTGAAATGGATTGGGTGTTGAAGCATACTGGTCCAAATAGTCCTGACACGGCCAATGATGGCTTTGTA
CGACTTAGAGGACTCCCCTTTGGATGTAGCAAGGAAGAAATTGTTCAGTTCTTCTCAGGGTTGGAAATCGTGCCAAATGG
GATAACATTGCCGGTGGACTTCCAGGGGAGGAGTACGGGGGAGGCCTTCGTGCAGTTTGCTTCACAGGAAATAGCTGAAA
AGGCTCTAAAGAAACACAAGGAAAGAATAGGGCACAGGTATATTGAAATCTTTAAGAGCAGCCGAGCTGAAGTTAGAACT
CACTATGACCCACCACGAAAGCTAATGGCCATGCAGCGGCCAGGTCCCTATGACAGACCTGGGGCTGGCAGGGGATATAA
CAGCATTGGCAGAGGAGCTGGCTTTGAAAGGATGCGGCGTGGTGCTTATGGTGGAGGGTATGGAGGCTCTGGGGATTATG
GAGGCTATGATGATGGCTATGGATTTGGGTCAGATAGATTTGGAAGAGACCTCAATTACTGTTTTTCAGGAATGTCTGAT
CACAGATATGGAGATGGTGGTTCTACTTTCCAG

Library Parental gene expression (RPM)
SRP017611_brain 88 .79 RPM
SRP017611_kidney 109 .71 RPM
SRP017611_liver 45 .50 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000003841 possible_ortholog 4 retrogenes
retro_chof_1051, retro_chof_1235, retro_chof_1491, retro_chof_2650,
Equus caballus ENSECAG00000014429 possible_ortholog 1 retrogene
retro_ecab_94,
Erinaceus europaeus ENSEEUG00000013364 within_species_paralog 2 retrogenes
retro_eeur_478, retro_eeur_649,
Echinops telfairi ENSETEG00000011303 possible_ortholog 1 retrogene
retro_etel_50,
Loxodonta africana ENSLAFG00000015766 ortholog_one2many 2 retrogenes
retro_lafr_366, retro_lafr_74,
Myotis lucifugus ENSMLUG00000016625 possible_ortholog 1 retrogene
retro_mluc_124,
Macaca mulatta ENSMMUG00000010843 possible_ortholog 1 retrogene
retro_mmul_2,
Monodelphis domestica ENSMODG00000009436 possible_ortholog 3 retrogenes
retro_mdom_1301, retro_mdom_1302, retro_mdom_333,
Ochotona princeps ENSOPRG00000003513 possible_ortholog 1 retrogene
retro_opri_11,
Procavia capensis ENSPCAG00000006715 possible_ortholog 1 retrogene
retro_pcap_4,
Pteropus vampyrus ENSPVAG00000007670 possible_ortholog 1 retrogene
retro_pvam_23,
Sorex araneus ENSSARG00000003024 possible_ortholog 1 retrogene
retro_sara_29,
Sarcophilus harrisii ENSSHAG00000018204 possible_ortholog 1 retrogene
retro_shar_674,
Vicugna pacos ENSVPAG00000007485 possible_ortholog 2 retrogenes
retro_vpac_594, retro_vpac_614,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_481 59.41 79.28
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Download FASTA sequences of all ENSEEUG00000010991 retrocopies