Parental gene:

RNF138, ENSEEUG00000009856

Aliases:None
Description:ring finger protein 138, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:17765]
Organism:Hedgehog (Erinaceus europaeus)
Coordinates:GeneScaffold_3823:4280..17176(+)


>ENSEEUG00000009856
TTCTGTAGAAAATGTTTCCTGACTGCAATGAGAGAAAGTGGAATACATTGTCCTCTCTGCCGTGGAAATGTGACTAGAAG
AGAAAGAGCATGTCCTGAACGGGCCTTAGACCTTGAAAATATCATGAGAAAGTTTTCTGGTAGCTGCAGGTGCTGTGCAA
AACAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATAGGAGTGAAACCTCTACATCAGATAACACAGAAAC
TTACCCAGAGAGTACAAGTTCTGGGCATCCCACCTTTAAGTGTCCCTTATGTCAAGAGTCAAATTTTACCAGACAGCGCT
TACTGGATCACTGTAACACCAACCACCTATTTCAGATAGTTCCTGTGACGTGTCCTATTTGTGTGTCTCTTCCTTGGGGA
GATCCGAGCCAGATCACTAGAAATTTTGTTAGTCATCTAAATCAAAGACATCAGTTTGATTATGGAGAATTTGTGAATCT
TCAACTAGATGAGGAAACCCAGTATCAAACTGCTGTTGAAGAATTTCAAGTAAACCTCTGA

Library Parental gene expression (RPM)
SRP017611_brain 12 .09 RPM
SRP017611_kidney 7 .31 RPM
SRP017611_liver 3 .05 RPM



Species Parental gene accession Homology type Retrogenes number
Monodelphis domestica ENSMODG00000010850 ortholog_one2many 4 retrogenes
retro_mdom_1468, retro_mdom_387, retro_mdom_708, retro_mdom_725,
Mus musculus ENSMUSG00000024317 ortholog_one2one 2 retrogenes
retro_mmus_3726, retro_mmus_494,
Ochotona princeps ENSOPRG00000011494 ortholog_one2one 1 retrogene
retro_opri_554,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_eeur_430 88.50 53.88
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Download FASTA sequences of all ENSEEUG00000009856 retrocopies