Parental gene:

HIBADH, ENSDNOG00000008640

Aliases:None
Description:3-hydroxyisobutyrate dehydrogenase [Source:HGNC Symbol;Acc:4907]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_1508:67990..250359(-)


>ENSDNOG00000008640
ATGGCAACCTCGTTACGGCTCCGAGGAGCTGCCTCCAGCTTCCAGTACTGGAGCCGCCGGCAGCGGCTGGCTACGGCTGG
CCTTGCAGCGGTGTGTTCTAGGTCAATGGCTTCTAAGACTCCAATTGGATTCATTGGACTGGGCAACATGGGGAATCCAA
TGGCCAAAAATCTCATGAAACATGGCTATCCACTCATTATTTATGATGTGTTCCCTGATGCATGCAAAGAGTTTCAAGAA
CGAGGTGAACAGGTAGTGTCTTCCCCAGCAGATGTAGCTGAAAAGGCAGACAGAATTATTACAATGCTGCCCACAAGTAT
CAATGCAATTGAAGTTTATTCTGGGGCAAATGGAATTCTAAGGAAAGTGAAGAAAGGCTCATTATTAATAGATTCCAGTA
CTATTGATCCCACAGTTTCAAAAGAATTGGCTAAAGAAGTTGAGAAAATGGGGGCAGTTTTCATGGATGCCCCTGTTTCT
GGTGGTGTGGGAGCTGCTCGGTCTGGGAACCTCACATTTATGGTGGGAGGAGTTGAAGAAGAATTTGCTGCTGCTCAACA
GTTGCTGGGGTGCATGGGCTCCAATGTGGTGTATTGTGGAGGTGTTGGAACTGGGCAGGCTGCAAAGATCTGCAACAATA
TGTTGTTAGCTATTAGTATGATTGGAACTGCTGAAGCTATGAATCTTGGAATCAGGCTAGGGCTTGACCCAAAACTATTG
GCTAAAATCCTAAATATGAGCTCAGGACGGTGTTGGTCAAGCGACACTTACAATCCTGTCCCGGGGGTGATGGATGGAGT
TCCCTCGGCTAATAATTATCAGGGTGGATTCGGAGCAACACTCATGGCCAAGCTAGTATTAGCACAAGATGCTACCAACA
CAAAGAGTCCAATTCTTCTGAGCAGTCTGGTCCATCACATCTATAGGACAATATGTGCAAATGGCTACTCAAAGAAAGAG
TTCTTGTCTGTGTTCCAGTTTCTAGAGAACCTGGAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 33 .45 RPM
SRP012922_cerebellum 16 .36 RPM
SRP012922_heart 41 .30 RPM
SRP012922_kidney 92 .00 RPM
SRP012922_liver 13 .16 RPM
SRP012922_lung 21 .84 RPM
SRP012922_quadricep_muscle 51 .06 RPM
SRP012922_spleen 22 .55 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005849 ortholog_one2one 1 retrogene
retro_amel_678,
Choloepus hoffmanni ENSCHOG00000003153 ortholog_one2one 1 retrogene
retro_chof_1225,
Microcebus murinus ENSMICG00000000512 ortholog_one2one 1 retrogene
retro_mmur_1059,
Mus musculus ENSMUSG00000029776 ortholog_one2one 1 retrogene
retro_mmus_2360,
Oryctolagus cuniculus ENSOCUG00000010349 ortholog_one2one 1 retrogene
retro_ocun_1896,
Sus scrofa ENSSSCG00000016695 ortholog_one2many 1 retrogene
retro_sscr_792,
Ictidomys tridecemlineatus ENSSTOG00000004108 ortholog_one2one 1 retrogene
retro_itri_395,
Tarsius syrichta ENSTSYG00000014191 ortholog_one2one 1 retrogene
retro_tsyr_1136,
Tursiops truncatus ENSTTRG00000015276 ortholog_one2one 4 retrogenes
retro_ttru_124, retro_ttru_150, retro_ttru_589, retro_ttru_807,
Vicugna pacos ENSVPAG00000012531 ortholog_one2one 1 retrogene
retro_vpac_571,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_1465 68.91 56.33
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2. retro_dnov_1997 84.48 51.81
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Download FASTA sequences of all ENSDNOG00000008640 retrocopies