Parental gene:

PRPS1L1, ENSDNOG00000002028

Aliases:None
Description:phosphoribosyl pyrophosphate synthetase 1-like 1 [Source:HGNC Symbol;Acc:9463]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:scaffold_25856:3396..21943(+)


>ENSDNOG00000002028
ATGCCGAATATCAAAATCTTCAGCGGTAGCTCCCACCAGGATTTATCCCAGAAAATTGCCGACCGCCTGGGCCTGGAGCT
AGGCAAGGTGGTGACTAAGAAATTCAGCAACCAGGAGACCTGTGTGGAAATTGGAGAGAGTGTACGTGGAGAGGATGTCT
ACATTGTTCAGAGTGGTTGTAGTGAAATCAACGACAATCTCATGGAGCTTTTGATTATGATTAATGCCTGCAAGATCGCT
TCAGCCAGCCGGGTTACTGCAGTCATCCCATGCTTCCCTTATGCCCGGCAGGATAAGAAGGATAAGAGCCGGGCCCCAAT
CTCGGCCAAGCTTGTCGCAAATATGCTGTCTGTAGCAGGCGCAGATCATATCATCACCATGGACCTACACGCTTCTCAAA
TTCAGGGCTTTTTTGATATCCCAGTGGACAATTTGTATGCAGAGCCAGCTGTCCTGAAATGGATAAAGGAGAATATCTCT
GAAAGAAACTGCACTATTGTCTCACCAGATGCTGGTGGAGCTAAGAGAGTGACCTCCATTGCAGACCGATTGAATGTGGA
CTTTGCCTTGATTCACAAAGAACGGAAGAAGGCCAATGAAGTGGACCGCATGGTGCTGGTGGGAGATGTGAAGGATCGAG
TGGCTATCCTTGTGGATGACATGGCTGACACTTGCGGCACAATCTGTCATGCAGCTGACAAACTTTTGTCAGCTGGAGCC
ACCAGAGTTTATGCTATCTTGACGCATGGAATCTTTTCTGGCCCAGCCATTTCTCGAATCAACAATGCATGTTTTGAAGC
AGTAGTAGTCACCAATACCATACCTCAGGAGGATAAGATGAAGCATTGTTCCAAAATCCAGGTGATTGATATCTCCATGA
TCCTTGCAGAAGCCATCAGGAGAACTCACAATGGGGAATCTGTTTCCTACCTATTCAGCCATGTCCCTTTATAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 15 .56 RPM
SRP012922_cerebellum 38 .08 RPM
SRP012922_heart 10 .91 RPM
SRP012922_kidney 15 .88 RPM
SRP012922_liver 17 .18 RPM
SRP012922_lung 30 .85 RPM
SRP012922_quadricep_muscle 27 .00 RPM
SRP012922_spleen 37 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000003550 within_species_paralog 1 retrogene
retro_dnov_280,
Dipodomys ordii ENSDORG00000014534 ortholog_one2one 2 retrogenes
retro_dord_356, retro_dord_632,
Echinops telfairi ENSETEG00000014736 ortholog_one2one 1 retrogene
retro_etel_267,
Macropus eugenii ENSMEUG00000010071 ortholog_one2one 2 retrogenes
retro_meug_1612, retro_meug_443,
Oryctolagus cuniculus ENSOCUG00000012391 ortholog_one2one 3 retrogenes
retro_ocun_430, retro_ocun_867, retro_ocun_912,
Ochotona princeps ENSOPRG00000013140 ortholog_one2many 1 retrogene
retro_opri_704,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_947 81.22 61.51
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2. retro_dnov_2677 76.73 84.86
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Download FASTA sequences of all ENSDNOG00000002028 retrocopies