Parental gene:

PCGF3, ENSCJAG00000001960

Aliases:None
Description:polycomb group ring finger 3 [Source:HGNC Symbol;Acc:10066]
Organism:Marmoset (Callithrix jacchus)
Coordinates:3:190184098..190255224(-)


>ENSCJAG00000001960
ATGTTGACCAGGAAGATCAAGCTGTGGGACATCAACGCCCACATCACCTGCCGCCTGTGCAGCGGGTACCTCATCGATGC
CACCACGGTGACCGAGTGCCTGCACACCTTCTGCAGGAGCTGCCTGGTGAAGTACCTGGAGGAGAACAACACCTGCCCCA
CCTGCAGGATCGTGATCCACCAGAGCCACCCGCTACAGTACATCGGTCATGACAGAACCATGCAAGACATTGTTTACAAA
TTGGTACCAGGCCTCCAAGAAGCGGAAATGAGAAAGCAGAGGGAGTTCTATCACAAGCTGGTAAAATGGCAGAATAATGG
AAAAGGTGAAACCAAAGCAGACGACAGTTCAAACAAAGAGGCTGCAGAAGAGAAGCCGGAGGAGGACAACGACTACCACC
GCAGCGACGAGCAGGTGAGCATCTGCCTGGAGTGCAACAGCAGCAAGCTGCGGGGCCTGAAGCGCAAGTGGATCCGCTGC
TCCGCCCAGGCCACCGTCCTGCACCTCAAGAAGTTCATCGCCAAAAAGCTCAACCTGTCATCCTTCAACGAGCTGGACAT
TTTATGCAACGAGGAGATCCTGGGCAAGGACCACACGCTCAAGTTCGTGGTTGTCACGAGGTGGAGATTCAAGCGCGGGG
TGAGAAGCCAGTGCCAGTCTGGGGCTGGGCCAGAGGGCTTGAGGGAGAAGGGAGCAGGGGAGCAGAAGGCGCCACTCCTG
CTGCACTACAGACCCAAGATGGACTTGCTGTGA

Library Parental gene expression (RPM)
SRP051959_colon 4 .68 RPM
SRP051959_heart 4 .79 RPM
SRP051959_kidney 5 .70 RPM
SRP051959_liver 2 .36 RPM
SRP051959_lung 5 .56 RPM
SRP051959_lymph_node 6 .10 RPM
SRP051959_skeletal_muscle 4 .61 RPM
SRP051959_spleen 4 .20 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000011001 within_species_paralog 1 retrogene
retro_cjac_2702,
Callithrix jacchus ENSCJAG00000036548 within_species_paralog 1 retrogene
retro_cjac_2437,
Macaca mulatta ENSMMUG00000012624 ortholog_one2one 1 retrogene
retro_mmul_2182,
Monodelphis domestica ENSMODG00000005677 ortholog_one2one 3 retrogenes
retro_mdom_1481, retro_mdom_885, retro_mdom_985,
Nomascus leucogenys ENSNLEG00000000926 ortholog_one2one 1 retrogene
retro_nleu_1826,
Otolemur garnettii ENSOGAG00000015569 ortholog_one2one 1 retrogene
retro_ogar_2846,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_707 60.00 64.75
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Download FASTA sequences of all ENSCJAG00000001960 retrocopies