RetrogeneDB ID:

retro_ttru_776

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_3390:17012..17636(+)
Located in intron of:ENSTTRG00000008485
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:VDAC2
Ensembl ID:ENSTTRG00000000371
Aliases:None
Description:voltage-dependent anion channel 2 [Source:HGNC Symbol;Acc:12672]


Retrocopy-Parental alignment summary:






>retro_ttru_776
GAGAAATGGAACACTGACAACACACTAGGCACGGAGATTACTGTGGAAGATCAGCTTGCACGTGGCCTGACGCTGACCTT
TCGATTCATCCTTCTCACCAAACACTGGGGAAAAAAAATGCTAAAATCAAGACAGGGTACAAGCGGGAACATTGTCAACC
TGGGCTGTGACGTGGATTTCGACATTGCCGGGCCTTCCGCCCGGGTGCTCTCGTGCTGGGTTATGAGGGCTGGCTGGCTG
GCTGACTACCAGATGAATTTTGAGACCACAAAGTCTTGAGTGATCCAGAGCAACTTTGCGGTTGGCTACAAGACCGATGA
ATCTGAATTCCAGCTTCACACTAATGTAAATGATGGGACGGAGTTTGGCGGCTCCATTTATCAGAAGGTGAACAGGAAGT
TGGAGACTGCTGTTAATCTGGCCTGGACAGCGGGAAACAGTAACACTCGCTTCGGAATAGCAGCCAAGTACCAGATCAAC
CCTGACGCCTGCTTCTCGGCTAAAGTGAACAACTCCAGCCCGATAGGGTTAGAATATACTCAGACCCTAAAGCCAGGTAT
CAAACTGACACTGTCAGTTCTGCTGGATGGCAGGAATGTCAGTGCTGGTGGCCACAGGCTTGGT

ORF - retro_ttru_776 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 65.24 %
Parental protein coverage: 63.95 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalEKWNTDNTLGTEIAIEDQICQGLKLTF-DTTFSPNTGKKS-GKIKSSYKRE-CMNLGCDVDFDFAGPAIH
EKWNTDNTLGTEI..EDQ...GL.LTF.D..FSPNTG.....KIK..YKRE...NLGCDVDFD.AGP...
RetrocopyEKWNTDNTLGTEITVEDQLARGLTLTF>DSSFSPNTGXXX>AKIKTGYKRE>IVNLGCDVDFDIAGPSAR
ParentalGSAVFCYE-GWLAGYQMTFDSAKSKLTRNNFAVGYRT--GDFQLHTNVNDGTEFGGSIYQKVCEDLDTSV
.........GWLA.YQM.F...KS.....NFAVGY.T....FQLHTNVNDGTEFGGSIYQKV...L.T.V
RetrocopyVLSCWVMRAGWLADYQMNFETTKS*VIQSNFAVGYKTDESEFQLHTNVNDGTEFGGSIYQKVNRKLETAV
ParentalNLAWTSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKLG
NLAWT.G...TRFGIAAKYQ..P.A..SAKVNNSS.IG..YTQTL.PG.KLTLS.L.DG....AGGH.LG
RetrocopyNLAWTAGNSNTRFGIAAKYQINPDACFSAKVNNSSPIGLEYTQTLKPGIKLTLSVLLDGRNVSAGGHRLG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide