RetrogeneDB ID:

retro_ogar_1427

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873547.1:4485899..4486285(+)
Located in intron of:ENSOGAG00000009860
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL12
Ensembl ID:ENSOGAG00000000597
Aliases:None
Description:ribosomal protein L12 [Source:HGNC Symbol;Acc:10302]


Retrocopy-Parental alignment summary:






>retro_ogar_1427
TTTGACCCCAACGAGATCAAAGTTGTGCACCTGAGGTGCGCCAGTGGCAAAGTTGATGCCATGTCTGCCCTGGCCCCCAA
GATCAGCCCCTGGGTTTGTCTCCAAAAATGGTTGGTGATGGTATCACCAAAGCAACTGATGATTGGAAGGGTCTGAGGAT
TACAGTGAAACTGACTATCTACAACACACAGGCCCAGATTGAAGTGGTACCTTCTGCCTCTGCACTGATCACCAATGCCT
TCAAGGAACCAACAAGAAAACAGAAAAACATTGAACTCGATGGAAATATCACTTTTGATGAGATCGTCAACAATGCCAGA
CAGATATGGCACCAATCTTTAGACAGTGAACTCTTTGGAAACATTAAAGAAATCTTGGGCAGCGCC

ORF - retro_ogar_1427 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.19 %
Parental protein coverage: 80. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalFDPNEIKVVYLRCTGGEVGATSALAPKIGP-LGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEV
FDPNEIKVV.LRC..G.V.A.SALAPKI.P.LGLSPK.VGD.I.KAT.DWKGLRITVKLTI.N.QAQIEV
RetrocopyFDPNEIKVVHLRCASGKVDAMSALAPKISP<LGLSPKMVGDGITKATDDWKGLRITVKLTIYNTQAQIEV
ParentalVPSASALIIKALKEPPRDRKKQKNIKHNGNITFDEIVNIARQMRHRSLARELSGTIKEILGTA
VPSASALI..A.KEP.R...KQKNI...GNITFDEIVN.ARQ..H.SL..EL.G.IKEILG.A
RetrocopyVPSASALITNAFKEPTR---KQKNIELDGNITFDEIVNNARQIWHQSLDSELFGNIKEILGSA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Otolemur garnettii was not studied using RNA-Seq expression data.