RetrogeneDB ID:

retro_nleu_2453

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397357.1:5534859..5535269(+)
Located in intron of:ENSNLEG00000011847
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:PRDX3
Ensembl ID:ENSNLEG00000016698
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_2453
AATGAATTATACAACGTGAACTGTGAAGTTGTTGCAGTCTTAGTGGATTCTGACTTTAGCCATCTTGCTTGGATAAATAT
ACCAAGAAAAAATGGTGGTTTGGGCCACATGAACATCACACTTTCATCAGATTTAACTAAACACATTTCCCGAGACTATG
GTATGCTGTTAGAAGGTCCTGGTTTGCACTAAGAGGAGTCTTCATAATTGACCCCATGAATTTATCGAGCATTTGAGTGT
CAGTGACCTCCCAGTGGGCTAAAGCATGGAAGACACCCTCTGCTTGGTAAAGGCACTCCAGTTTGTAAAAAACCCACGGA
GAAGTCTGCCCAGCAAACTGGACACTGGAGTCTCCCACAATCAAGTCAAATCAAACTGTTTCCAAAGAATACTTTGAGAA
GGTAAATCAG

ORF - retro_nleu_2453 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.71 %
Parental protein coverage: 53.52 %
Number of stop codons detected: 1
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalNEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGSGL-ALRGLFI
NE...VNCEVVAV.VDS.FSHLAWIN.PRKNGGLGHMNI.L.SDLTK.ISRDYG.LLEG.GL.ALRG.FI
RetrocopyNELYNVNCEVVAVLVDSDFSHLAWINIPRKNGGLGHMNITLSSDLTKHISRDYGMLLEGPGL<ALRGVFI
ParentalIDPNGV-IKHLSVNDLPVGRSVEETLRLVKAFQYV-ETHGEVCPANWTPDSPTIKPNPAASKEYFQKVNQ
IDP....I.HLSV.DLPVG.S.E.TL.LVKA.Q.V..THGEVCPANWT..SPTIK.N...SKEYF.KVNQ
RetrocopyIDPMNL<IEHLSVSDLPVG*SMEDTLCLVKALQFV>KTHGEVCPANWTLESPTIKSNQTVSKEYFEKVNQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Nomascus leucogenys was not studied using RNA-Seq expression data.