RetrogeneDB ID: retro_mmur_1065

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_18763:5945..7224(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SEPT6
• Ensembl ID: ENSMICG00000002769
• Aliases: None
• Description: septin 6 [Source:HGNC Symbol;Acc:15848]

Sequence

>retro_mmur_1065
TCCAAGGAGCAGGGTGAAGGTTGCCGAACTGTCCCCCTGGCTGGACATGTGGGGTTTGACAGCTTGCCTGACCAGCTGGT
GAATAAGTCAGTCAGCCAGGGCTTCTGCTTCAACATCCTGTGCGTGGGAGAGACTGGTTTGGGCAAGTCCACCCTCATGG
ACACCCTGTTCAACACAAAGTTTGAAGGGGAGCCAGCCACCCACACACAGCCAGGTGTCCAGCTTCGGTCCAATACCTAT
GACCTCCAAGAGAGCAATGTGGGGCTAAAGCTCATGATCGTTAGCACGGTGGGCTTTGGGGACCAGATCAACAAGGAGGA
CAGCTATAAGCCCATTGTGGAATTCATCGATGCACAATTCGAGGCCTACCTGCAGGAGGAGCTGAAGATCCGAAGAGTGC
TGCACACCTACTATGACTCCCGAATCCACGCCTGCTTGTATTTCATCGCCCCAACGGGTCATTCCCTGAAGTCTCTGGAC
CTAGTGACAATGAAGAAGCTTGACAGTAAGGTGAACATCATCCCCATCATTGCCAAATCAGATACCATTTCTAAGAGTGA
GCTAACGAAGTTCAAACTCAAAATCACCAGCGAGCTTGTCAGCAACGGGGTCCAGATCTATCAGTTCCCTACAGATGACG
AGTCGGTGGCAGAGATCAACAGAACCATGAATGCTCACCTGCCGTTTGCTGTCATTGGCAGCACAGAAGAAGTGAAGATA
GGCAACAAGATGATGAAGGCACGGCAGTATCCTTGGGGCACTGTGCAGGTTGAAAACGAGGCCCACTGTGACTTTGTGAA
GCTGCGGGAGATGCTGATTCGGGTCAACATGGAGGATCTGCGGGAGCAGACCCACACCCGGCACTATGAGCTGCACCGCC
GCTGTAAGCTGGAGGAGATGGGCTTCAAGGACACGGACCCTGACAACAAACCATTCAGCTTGCAGGAGACATATGAGGCC
AAAAGGAATGAGTTCCTAGGGGAGCTCCAGAAAAAAGAAGAGGAGATGAGACAGATGTTCGTCCAGAGAGTCAAAGAGAA
AGAAGCAGAACTCAAAGAGGCAGAGAAAGAGCTGCATGAGAAGTTTGATCGCCTGAAGAAACTGCACCAGGATGAGAAGA
AGAAGCTGGAGGATAAGAAGAAATCTCTGGACGATGAAGTAAATGCTTTTAAACAGAGAAAGACAGCAGCCGAGCTGCTC
CAGTCCCAGGGTCCCCAGGCTGGAGGCTCACAGACTCTGAAGAGAGACAAAGAAAAGAAAAATTAACCCTGCTGTTTGC

Alignment

ORF - retro_mmur_1065 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.85 %
• Parental protein coverage: 98.14 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ARQVGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDT-FNTKFEGEP-THTQ
          ....GEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDT.FNTKFEGEP.THTQ
Retrocopy SKEQGEGCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQ

Parental  PGVQLRSNTYDLQESNVGLKLTIVSTVGFGDQINKEDXXXXIVEFIDAQFEAYLQEELKIRRVLHTYHDS
          PGVQLRSNTYDLQESNVGLKL.IVSTVGFGDQINKED....IVEFIDAQFEAYLQEELKIRRVLHTY.DS
Retrocopy PGVQLRSNTYDLQESNVGLKLMIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYYDS

Parental  RIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDTISKSELTKFKIKITSELVSNGVQIYQFP
          RIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDTISKSELTKFK.KITSELVSNGVQIYQFP
Retrocopy RIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDTISKSELTKFKLKITSELVSNGVQIYQFP

Parental  TDDESVAEITM---AHLPFAVIGSTEEVKIGNKMMKARQYPWGTVQVENEAHCDFVKLREMLIRVNMEDL
          TDDESVAEI.....AHLPFAVIGSTEEVKIGNKMMKARQYPWGTVQVENEAHCDFVKLREMLIRVNMEDL
Retrocopy TDDESVAEINRTMNAHLPFAVIGSTEEVKIGNKMMKARQYPWGTVQVENEAHCDFVKLREMLIRVNMEDL

Parental  REQTHTRHYELYRRCKLEEMGFKDTDPDNKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAE
          REQTHTRHYEL.RRCKLEEMGFKDTDPDNKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAE
Retrocopy REQTHTRHYELHRRCKLEEMGFKDTDPDNKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAE

Parental  LKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGPQAGGSQTLKRDKEKK
          LKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGPQAGGSQTLKRDKEKK
Retrocopy LKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGPQAGGSQTLKRDKEKK

Parental  N-NPWLC
          N.NP..C
Retrocopy N>NPAVC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1065 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1065 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000004291	1 retrocopy	retro_btau_627,
Macropus eugenii	ENSMEUG00000006112	1 retrocopy	retro_meug_1193,
Microcebus murinus	ENSMICG00000002769	1 retrocopy	retro_mmur_1065 ,