RetrogeneDB ID: retro_mmur_10

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_3903:374819..375842(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000003373
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: CSNK1E
• Ensembl ID: ENSMICG00000011583
• Aliases: None
• Description: casein kinase 1, epsilon [Source:HGNC Symbol;Acc:2453]

Sequence

>retro_mmur_10
ATGGCGAGCGCTGGCGCCTCCAAGGCCGAGATCATCGGGGGAGGGAAATACAAACTGGTGCGGAAGATCGGGTCTGGCTC
CTTCGGGGAGGTTTATCTGGCCATCAACCTCACCAACGGCGACGAAGTGGCGGTGAAGCTGGAATCCCAGAAGGCCAAGC
ATCCCCAGTTGCTGTACGAGAGCAAACTCTACACCATCCTCGAAGGCGGGGTGGGCATCCCCCACGTACACTGGTATGGT
CAGGAAAAAGACAGCAACGTGCTGGTCATGGATCTTCTGGGACCCAGCCTCGAAGACCTCTTCAACTTCTGTTCGAGAAG
GTTCACGATGAAAACTGTACTCATGTTAGCTGACCAGATGATCAGTAGAGTCGAGTATGTGCACACAAAGAACTTTCTAC
ACAGAGACATTAAACCGGATAACTTCCTGATGGGCATCGGGCGTCACTGTAACAAGTTGTTCCTTATTGATTTTGGCTTG
GCCAAAAAGTACAGAGACAACAGGACGAGGCAACACATCCCATACAGAGAAGATAAACACCTCACTGGCACTGTCCGGTA
TGCTAGCATCAATGCACATCTTGGTATTGAGCAGAGTCGCCGAGATGACATGGAATCATTAGGCTATGTTTTGATGTATT
TTAATAGAACCAACCTGCCATGGCAAGGACTAAAGGCTCTAACAAAGAAACAAAAATATGAAAAGATTAGTGAAAAGAAG
ATGTCCACGCCTGTCGAGGTTTTATGTAAGGGATTTCCTTCAGAATTTGCCATGTACTTAAACTATTGTCGTGGGCTGCG
CTTTGAGGAAGTTCCGGATTACATTTATCTGAGACAGCTGTTCCGCATTCTTTTCAGGACCCTGAACCACCAATATGACT
ACACATTTGATTGGACAATGTTGAAACAGAAAGCCGCACAGCAGGCAACCACTACCAACGAGCAGGGCCAGCAGGGCCAG
CTGGCCCACACCTCCACAAGTAAGCCACAGGAGAAAGGCAAGGGTAACCCAAAAGGTTACTAA

Alignment

ORF - retro_mmur_10 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.28 %
• Parental protein coverage: 74.28 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ELRVGNKYRLGRKIGSGSFGDIYLGANIASGEEVAIKLECVKTKHPQLHIESKFYKMMQGGVGIPSIKWC
          E...G.KY.L.RKIGSGSFG..YL..N...G.EVA.KLE..K.KHPQL..ESK.Y....GGVGIP...W.
Retrocopy EIIGGGKYKLVRKIGSGSFGEVYLAINLTNGDEVAVKLESQKAKHPQLLYESKLYTILEGGVGIPHVHWY

Parental  GAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKK
          G.E.D.NV.VM.LLGPSLEDLFNFCSR.F..KTVL.LADQMISR.EY.H.KNF.HRD.KPDNFLMG.G..
Retrocopy GQEKDSNVLVMDLLGPSLEDLFNFCSRRFTMKTVLMLADQMISRVEYVHTKNFLHRDIKPDNFLMGIGRH

Parental  GNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSL
          .N....IDFGLAKKYRD.RT.QHIPYRE.K.LTGT.RYASIN.HLGIEQSRRDD.ESLGYVLMYFN...L
Retrocopy CNKLFLIDFGLAKKYRDNRTRQHIPYREDKHLTGTVRYASINAHLGIEQSRRDDMESLGYVLMYFNRTNL

Parental  PWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFSTYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG
          PWQGLKA.TK.QKYE.ISEKKMSTP.EVLCKG.PSEF..YLN.CR.LRF...PDY.YLRQLFR.LF....
Retrocopy PWQGLKALTKKQKYEKISEKKMSTPVEVLCKGFPSEFAMYLNYCRGLRFEEVPDYIYLRQLFRILFRTLN

Parental  FSYDYVFDWNMLKFGASRNPEDVDRERRE
          ..YDY.FDW.MLK..A.............
Retrocopy HQYDYTFDWTMLKQKAAQQATTTNEQGQQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_10 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_10 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000011583	1 retrocopy	retro_mmur_10 ,
Nomascus leucogenys	ENSNLEG00000015080	1 retrocopy	retro_nleu_117,
Pongo abelii	ENSPPYG00000011818	1 retrocopy	retro_pabe_170,
Pan troglodytes	ENSPTRG00000014365	1 retrocopy	retro_ptro_7,