RetrogeneDB ID: retro_mluc_2334

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430221:362128..362850(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026335
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: NDRG1
• Ensembl ID: ENSMLUG00000005686
• Aliases: None
• Description: None

Sequence

>retro_mluc_2334
ATGTACCCGTCCATGGACCAGCTGGCCGAGATGCTGCCAGGAGTCCTCCACCAGTTTGGGGTGAAGAGCGTCATTGGCAT
GGGGACTGGGGCTGGCGCCTACATCTTCACTCGATTTGCCCTGAACAACTCCGAGATGGTGGAGGGCCTGGTGCTCATCA
ACGTGAACCCCTGTGCTGAGGGCTGGATGGACTGGGCGGCCTCCAAGATCTCTGGATGGACCCAGGCCCTTCCGGACATG
GTGGTGTCCCACCTCTTTGGGAAGGAGGAGATGCAGAACAACGTGGAGGTGGTGCACACCTACCGCCAGCACATCCTTAA
CGACATGAACCTGGCAACCTGCACTTGTTCATCAACGCCTACAACAGCCGGCGGGACCTGGAGATCGAGTGGCCGATGCC
GGGAGTGCACAGGGTCACCCTGCAGTGTCCTGTGTTGCTGGTGGTTGGGGACAGTTCTCCCGCCGTGGATGCTGTGGTGG
AGTGCAACTCAAAACTGGACCCAACCAAGACCACCCTCCTCAAGATGGGGGACTGTGGCGGCCTCCCGCAGATCTCCCAG
CCAGCCAAGCTCTCGGAGGCTTTCAAGTACTCCGTGCAGGGCATGGGATGCATGCCCTCTGCCAGCATGACCCGCCTGAT
GCAGTCCCGCACGGCCTCGGGCTTCAGTGTCACCTCCCTGGAGGGGTCCCACAGCCGCTCCCACACCAGCGAGGGCGCCC
GC

Alignment

ORF - retro_mluc_2334 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.63 %
• Parental protein coverage: 61.17 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MYPSMDQLAEMLPGVLHQFGVKSVIGMGTGAGAYILTRFALNNPEMVEGLVLINVNPCAEGWMDWAASKI
          MYPSMDQLAEMLPGVLHQFGVKSVIGMGTGAGAYI.TRFALNN.EMVEGLVLINVNPCAEGWMDWAASKI
Retrocopy MYPSMDQLAEMLPGVLHQFGVKSVIGMGTGAGAYIFTRFALNNSEMVEGLVLINVNPCAEGWMDWAASKI

Parental  SGWTQALPDMVVSHLFGKEEMQNNVEVVHTYRQHILNDMN-PGNLHLFINAYNSRRDLEIERPMPGVHTV
          SGWTQALPDMVVSHLFGKEEMQNNVEVVHTYRQHILNDMN.PGNLHLFINAYNSRRDLEIE.PMPGVH.V
Retrocopy SGWTQALPDMVVSHLFGKEEMQNNVEVVHTYRQHILNDMN<PGNLHLFINAYNSRRDLEIEWPMPGVHRV

Parental  TLQCPVLLVVGDSSPAVDAVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAEAFKYFVQGMGYMPSAS
          TLQCPVLLVVGDSSPAVDAVVECNSKLDPTKTTLLKM.DCGGLPQISQPAKL.EAFKY.VQGMG.MPSAS
Retrocopy TLQCPVLLVVGDSSPAVDAVVECNSKLDPTKTTLLKMGDCGGLPQISQPAKLSEAFKYSVQGMGCMPSAS

Parental  MTRLMRSRTASGSSVTSLEGSRSRSHTSEGTR
          MTRLM.SRTASG.SVTSLEGS.SRSHTSEG.R
Retrocopy MTRLMQSRTASGFSVTSLEGSHSRSHTSEGAR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2334 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000003003	3 retrocopies	retro_chof_1187, retro_chof_1560, retro_chof_844,
Myotis lucifugus	ENSMLUG00000005686	1 retrocopy	retro_mluc_2334 ,
Myotis lucifugus	ENSMLUG00000009735	1 retrocopy	retro_mluc_1054,