Parental gene:

ENSRNOG00000003670

Aliases:None
Description:None
Organism:Rat (Rattus norvegicus)
Coordinates:10:104184694..104194896(+)


>ENSRNOG00000003670
GCAAAGGAGAGGGCGAAAGAAGGAGTCAAGACTGAGAACAACGATCATATTAATTTGAAGGTGGCGGGACAGGATGGTTC
TGTGGTGCAGTTTAAGATTAAGAGGCATACACCACTTAGTAAACTAATGAAAGCCTATTGTGAACGGCAGGGTTTGTCAA
TGAGGCAGATCAGATTCCGGTTTGATGGGCAACCAATCAACGAAACAGACACACCTGCACAGTTGGAAATGGAGGATGAA
GATACGATTGATGTGTTCCAGCAGCAGACAGGAGGCGTCTACTGA

Library Parental gene expression (RPM)
SRP017611_liver 6 .66 RPM
SRP017611_kidney 21 .70 RPM
SRP017611_brain 28 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000017321 possible_ortholog 3 retrogenes
retro_btau_1730, retro_btau_580, retro_btau_701,
Bos taurus ENSBTAG00000030169 possible_ortholog 8 retrogenes
retro_btau_1047, retro_btau_1484, retro_btau_1804, retro_btau_260, retro_btau_344, retro_btau_489, retro_btau_582, retro_btau_895,
Choloepus hoffmanni ENSCHOG00000010239 possible_ortholog 1 retrogene
retro_chof_2468,
Cavia porcellus ENSCPOG00000025203 possible_ortholog 3 retrogenes
retro_cpor_328, retro_cpor_645, retro_cpor_963,
Felis catus ENSFCAG00000026550 possible_ortholog 4 retrogenes
retro_fcat_1210, retro_fcat_1947, retro_fcat_823, retro_fcat_836,
Homo sapiens ENSG00000184900 possible_ortholog 4 retrogenes
retro_hsap_1675, retro_hsap_1841, retro_hsap_3672, retro_hsap_4103,
Myotis lucifugus ENSMLUG00000025342 ortholog_one2many 4 retrogenes
retro_mluc_1502, retro_mluc_272, retro_mluc_340, retro_mluc_625,
Myotis lucifugus ENSMLUG00000028601 possible_ortholog 2 retrogenes
retro_mluc_1321, retro_mluc_2494,
Macaca mulatta ENSMMUG00000006760 possible_ortholog 3 retrogenes
retro_mmul_2131, retro_mmul_2215, retro_mmul_47,
Mustela putorius furo ENSMPUG00000010234 possible_ortholog 1 retrogene
retro_mputfur_1504,
Mustela putorius furo ENSMPUG00000013954 ortholog_one2one 9 retrogenes
retro_mputfur_1086, retro_mputfur_1403, retro_mputfur_1535, retro_mputfur_273, retro_mputfur_275, retro_mputfur_385, retro_mputfur_666, retro_mputfur_948, retro_mputfur_995,
Mus musculus ENSMUSG00000020265 possible_ortholog 1 retrogene
retro_mmus_3548,
Nomascus leucogenys ENSNLEG00000002351 possible_ortholog 9 retrogenes
retro_nleu_1084, retro_nleu_1253, retro_nleu_1736, retro_nleu_2052, retro_nleu_21, retro_nleu_2128, retro_nleu_3039, retro_nleu_523, retro_nleu_572,
Oryctolagus cuniculus ENSOCUG00000021739 possible_ortholog 4 retrogenes
retro_ocun_1024, retro_ocun_1631, retro_ocun_1690, retro_ocun_321,
Otolemur garnettii ENSOGAG00000004715 possible_ortholog 10 retrogenes
retro_ogar_1199, retro_ogar_1646, retro_ogar_1945, retro_ogar_2958, retro_ogar_328, retro_ogar_3469, retro_ogar_371, retro_ogar_419, retro_ogar_526, retro_ogar_967,
Rattus norvegicus ENSRNOG00000016133 within_species_paralog 2 retrogenes
retro_rnor_2015, retro_rnor_813,
Rattus norvegicus ENSRNOG00000038489 within_species_paralog 1 retrogene
retro_rnor_2158,
Sarcophilus harrisii ENSSHAG00000002220 ortholog_one2one 20 retrogenes
retro_shar_152, retro_shar_201, retro_shar_232, retro_shar_259, retro_shar_308, retro_shar_319, retro_shar_361, retro_shar_374, retro_shar_398, retro_shar_461, retro_shar_477, retro_shar_487, retro_shar_505, retro_shar_545, retro_shar_546, retro_shar_575, retro_shar_673, retro_shar_680, retro_shar_789, retro_shar_810,
Ictidomys tridecemlineatus ENSSTOG00000010587 possible_ortholog 2 retrogenes
retro_itri_116, retro_itri_1259,
Ictidomys tridecemlineatus ENSSTOG00000024685 ortholog_one2one 10 retrogenes
retro_itri_1017, retro_itri_1123, retro_itri_1355, retro_itri_202, retro_itri_264, retro_itri_272, retro_itri_79, retro_itri_921, retro_itri_981, retro_itri_983,
Takifugu rubripes ENSTRUG00000014892 possible_ortholog 1 retrogene
retro_trub_25,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_67 92.55 100.00
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2. retro_rnor_418 57.47 91.49
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Download FASTA sequences of all ENSRNOG00000003670 retrocopies